RNA id: TU118605


Basic Information

Item Value
RNA id TU118605
length 209
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G100027
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 15482829 ~ 15483037 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCCAACCTCTAGACTAAAAACGTCCACTATAACTATATAGGACTTCAATGAAAGAAATGCTAAgttgtgttttcatttgttatttttgtttgatcTGATTGCAGAGCatgtgttttcaggacagagtagTACATTTTTTGCCTGAGCTACATGCATTTAACCCCAGATATTATGACCAATTTTTCTAAGCTTCCctctagattttttt

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118600 lncRNA downstream 4663 15477501 ~ 15478166 (-) True G100023
XR_003403500.2 lncRNA downstream 45913 15433395 ~ 15436916 (-) True LOC113534479
TU118509 lncRNA downstream 164962 15317509 ~ 15317867 (-) True G99941
TU118481 lncRNA downstream 183251 15297605 ~ 15299578 (-) True G99915
TU118350 lncRNA downstream 301917 15176175 ~ 15180912 (-) True G99801
TU118606 lncRNA upstream 966 15484003 ~ 15484301 (-) True G100028
TU118613 lncRNA upstream 63539 15546576 ~ 15548763 (-) True G100034
TU118580 lncRNA upstream 120222 15603259 ~ 15603536 (-) True G100007
TU118651 lncRNA upstream 170349 15653386 ~ 15655787 (-) True G100072
XR_004578378.1 lncRNA upstream 207244 15690281 ~ 15726357 (-) True LOC113534668
XM_026927538.2 mRNA downstream 9814 15471629 ~ 15473015 (-) True LOC113534617
XM_034305486.1 mRNA downstream 125266 15348648 ~ 15357563 (-) False tmem170a
XM_026927603.2 mRNA upstream 2976 15486013 ~ 15499252 (-) True hsf4
XM_026927326.2 mRNA upstream 591910 16074947 ~ 16083613 (-) False nr2f2
XM_026927325.2 mRNA upstream 591910 16074947 ~ 16080265 (-) False nr2f2
XM_026927324.2 mRNA upstream 591910 16074947 ~ 16080265 (-) True nr2f2
XM_026927644.2 mRNA upstream 1098325 16581362 ~ 16610310 (-) True LOC113534689
TU118530 other downstream 128192 15347166 ~ 15354637 (-) True tmem170a
XR_003403523.2 other downstream 1135821 14335936 ~ 14347008 (-) False dennd11
XR_003403533.2 other downstream 1693982 13788751 ~ 13788847 (-) True LOC113534839
XR_003403534.1 other downstream 1694630 13788102 ~ 13788199 (-) True LOC113534840
XR_003403537.1 other downstream 1695043 13787657 ~ 13787786 (-) True LOC113534844
XR_004578368.1 other upstream 2603618 18086655 ~ 18086971 (-) True LOC117597604
TU119855 other upstream 2704410 18187447 ~ 18196806 (-) True G101178
XR_003402833.1 other upstream 3867725 19350762 ~ 19350943 (-) True LOC113527011
XR_003402829.1 other upstream 4497032 19980069 ~ 19980259 (-) True LOC113527007
TU121422 other upstream 5470565 20953602 ~ 20966910 (-) True G102566

Expression Profile