RNA id: TU118934


Basic Information

Item Value
RNA id TU118934
length 824
lncRNA type sense_over
GC content 0.34
exon number 1
gene id rgma
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 16657601 ~ 16680793 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTTTATTTGCTGtttgaaacaaaacagcaaatatCAAGAGATTGTATTGTTAACATTTGTGTAATGTCAGTTCTGCAGCTCTAAACTGTGAGTTGTACAAAATTTTGAGTTGTATTTGTTCTTAAGGTTTTGTATTTGTAAGTTTCTTTTAAATCTTGCATTTATTGGATGTTGAGTGAATGAATGTTTCCTTTTAATATAGTCATATTGTGTACATGAATACCTCAGACACCACAAATTATCTCTAATTAGTGGATCTTTAAAGATTTCTCTATACAAAAGTAGAAAGGTAATGTGAACTGTAATTTACTAAGAGGTGAGTCTTCTGGCGTTTGTGTTCATTACTAaagcactttgtttttttttgttttttttttcctttctagATGTGACACTTGTAAAATTACAATgggaaaaaacatttaagatGTATTACTGAATGGGAGAAGCCACACAGATCAAACTGATTTGTATATAGGATTAAAACAGTGCCACagtccacctgtgtgtgtgtatgtaaattataaattatttattcaacaaaaaaataaagtggcCTTGGATATGTGgtgtcatttcatttgtttaccATCACAAGCAGTAAACATAGACTGCCATCTGGTGGTCATATCATGATACTACAGAccttttataggaaaattattctgattattctATTATATACTTAACCCAGCCACTGGTAGtgtagtgtcagtgtcagtccCAAGCCGGGATAAAATGAGTGGGTTGTGTCAAGAAGGGTATCCGGCGTagaacctgtgccaaatcaaacaagCAGCCCAATGATCTGCTGTTGCGACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118961 lncRNA upstream 9945 16669387 ~ 16670025 (+) True G100355
TU118947 lncRNA upstream 95150 16584344 ~ 16584820 (+) True G100341
TU118946 lncRNA upstream 96023 16583621 ~ 16583947 (+) True G100340
TU118897 lncRNA upstream 361247 16318273 ~ 16318723 (+) True G100301
TU118892 lncRNA upstream 471556 16208165 ~ 16208414 (+) True G100296
XR_004578304.1 lncRNA downstream 70214 16751007 ~ 16755979 (+) True LOC117597522
XR_004578303.1 lncRNA downstream 72441 16753234 ~ 16755979 (+) False LOC117597522
XR_004578302.1 lncRNA downstream 72441 16753234 ~ 16755979 (+) False LOC117597522
XR_004578305.1 lncRNA downstream 72441 16753234 ~ 16755979 (+) False LOC117597522
TU118966 lncRNA downstream 77346 16758139 ~ 16758343 (+) True G100360
XM_034305372.1 mRNA upstream 168991 16500760 ~ 16510979 (+) True LOC113534621
XM_034305369.1 mRNA upstream 419797 16259445 ~ 16260173 (+) True LOC113534692
XM_026927790.2 mRNA upstream 823858 15812514 ~ 15856112 (+) True mctp2a
XM_034305538.1 mRNA upstream 870854 15723423 ~ 15809116 (+) True mef2aa
XM_026927242.2 mRNA downstream 83902 16764695 ~ 16816272 (+) True slco3a1
XM_026927243.2 mRNA downstream 83902 16764695 ~ 16814449 (+) False slco3a1
XM_034305391.1 mRNA downstream 158082 16838875 ~ 16928642 (+) True srpra
XM_034305393.1 mRNA downstream 158083 16838876 ~ 16928642 (+) False srpra
XM_034305394.1 mRNA downstream 158083 16838876 ~ 16928642 (+) False srpra
TU118951 other upstream 78903 16600257 ~ 16601067 (+) True G100345
TU118902 other upstream 330183 16349457 ~ 16349787 (+) True G100306
XR_004578337.1 other upstream 1334002 15300482 ~ 15345968 (+) False carmil2
TU117779 other upstream 2155490 14520801 ~ 14524480 (+) True G99341
XR_004578308.1 other upstream 2639188 14035230 ~ 14040782 (+) False skor1b
XR_004578324.1 other downstream 719633 17400426 ~ 17443468 (+) False LOC117597546
XR_003403945.2 other downstream 808753 17489546 ~ 17493092 (+) False LOC113539654
XR_004578373.1 other downstream 1867132 18547925 ~ 18548289 (+) True LOC117597608
TU120088 other downstream 1870653 18551446 ~ 18551724 (+) True G101403
TU120104 other downstream 1917921 18598714 ~ 18599375 (+) True G101419

Expression Profile