RNA id: TU118947


Basic Information

Item Value
RNA id TU118947
length 477
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G100341
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 16584344 ~ 16584820 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cagagaattgtctagggaaattgcaagatcctgagatggggatgaatcacctgggatgaacagcagttcagttttggtgggattaagtttcagctggtgagttgtcatccatgatgagatgtcagccagacaagctgatatccgagcagaaacatgagagtctgagggagggaaggagaggatgatttgagtgtcatctgcatagcagtggtatgaaaacccatgtgaggatatgaccgcaccaagagatcgagtatagagggagaacaggagaggaccaagtactgagccttgtggaacaccagtggagagtctgcgaggagcagatgtggatcccctccatgtcacctgatatgaccgatcttccaggtaggaagcaaaccattgccatgctgtaccacgaattcctaggctcatgagggtggataggagagtcttgtggttcaccgtgtcaaatgctgctgaaaggtcaaggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118946 lncRNA upstream 397 16583621 ~ 16583947 (+) True G100340
TU118897 lncRNA upstream 265621 16318273 ~ 16318723 (+) True G100301
TU118892 lncRNA upstream 375930 16208165 ~ 16208414 (+) True G100296
TU118888 lncRNA upstream 382274 16201861 ~ 16202070 (+) True G100292
TU118881 lncRNA upstream 386511 16197618 ~ 16197833 (+) True G100285
TU118961 lncRNA downstream 84567 16669387 ~ 16670025 (+) True G100355
TU118934 lncRNA downstream 95150 16679970 ~ 16680793 (+) False rgma
XR_004578304.1 lncRNA downstream 166187 16751007 ~ 16755979 (+) True LOC117597522
XR_004578303.1 lncRNA downstream 168414 16753234 ~ 16755979 (+) False LOC117597522
XR_004578302.1 lncRNA downstream 168414 16753234 ~ 16755979 (+) False LOC117597522
XM_034305372.1 mRNA upstream 73365 16500760 ~ 16510979 (+) True LOC113534621
XM_034305369.1 mRNA upstream 324171 16259445 ~ 16260173 (+) True LOC113534692
XM_026927790.2 mRNA upstream 728232 15812514 ~ 15856112 (+) True mctp2a
XM_034305538.1 mRNA upstream 775228 15723423 ~ 15809116 (+) True mef2aa
XM_026927763.2 mRNA downstream 72781 16657601 ~ 16680535 (+) True rgma
XM_026927242.2 mRNA downstream 179875 16764695 ~ 16816272 (+) True slco3a1
XM_026927243.2 mRNA downstream 179875 16764695 ~ 16814449 (+) False slco3a1
XM_034305391.1 mRNA downstream 254055 16838875 ~ 16928642 (+) True srpra
XM_034305393.1 mRNA downstream 254056 16838876 ~ 16928642 (+) False srpra
TU118902 other upstream 234557 16349457 ~ 16349787 (+) True G100306
XR_004578337.1 other upstream 1238376 15300482 ~ 15345968 (+) False carmil2
TU117779 other upstream 2059864 14520801 ~ 14524480 (+) True G99341
XR_004578308.1 other upstream 2543562 14035230 ~ 14040782 (+) False skor1b
TU117337 other upstream 2794954 13785095 ~ 13789390 (+) False G98972
TU118951 other downstream 15437 16600257 ~ 16601067 (+) True G100345
XR_004578324.1 other downstream 815606 17400426 ~ 17443468 (+) False LOC117597546
XR_003403945.2 other downstream 904726 17489546 ~ 17493092 (+) False LOC113539654
XR_004578373.1 other downstream 1963105 18547925 ~ 18548289 (+) True LOC117597608
TU120088 other downstream 1966626 18551446 ~ 18551724 (+) True G101403

Expression Profile