RNA id: TU118966


Basic Information

Item Value
RNA id TU118966
length 205
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G100360
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 16758139 ~ 16758343 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATAGAATCGATGTTGATGGAACTGTTGTGTTCATCACTGACCTCTTCCATCTCTGGCTCTGGCATATTACTGCACTGTGTATCGTTCACTCCAGGCTCCAGCTCCCCCGGTGCTCTGCCGCTTGCCAtccccacactgctgctgctgtaacctGGCCGAGTCGCCCTCTGAGCTCCCTGGCTGCACAGTGGACAGCCAAACTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578304.1 lncRNA upstream 2160 16751007 ~ 16755979 (+) True LOC117597522
XR_004578303.1 lncRNA upstream 2160 16753234 ~ 16755979 (+) False LOC117597522
XR_004578302.1 lncRNA upstream 2160 16753234 ~ 16755979 (+) False LOC117597522
XR_004578305.1 lncRNA upstream 2160 16753234 ~ 16755979 (+) False LOC117597522
TU118934 lncRNA upstream 77346 16679970 ~ 16680793 (+) False rgma
TU118968 lncRNA downstream 1968 16760311 ~ 16760534 (+) True G100362
TU118977 lncRNA downstream 64025 16822368 ~ 16823102 (+) True G100370
TU118986 lncRNA downstream 180392 16938735 ~ 16939728 (+) True G100379
TU119104 lncRNA downstream 213487 16971830 ~ 16972238 (+) True G100480
TU119131 lncRNA downstream 252372 17010715 ~ 17024228 (+) True G100499
XM_026927763.2 mRNA upstream 77604 16657601 ~ 16680535 (+) True rgma
XM_034305372.1 mRNA upstream 247160 16500760 ~ 16510979 (+) True LOC113534621
XM_034305369.1 mRNA upstream 497966 16259445 ~ 16260173 (+) True LOC113534692
XM_026927790.2 mRNA upstream 902027 15812514 ~ 15856112 (+) True mctp2a
XM_034305540.1 mRNA upstream 949023 15723423 ~ 15809116 (+) False mef2aa
XM_026927242.2 mRNA downstream 6352 16764695 ~ 16816272 (+) True slco3a1
XM_026927243.2 mRNA downstream 6352 16764695 ~ 16814449 (+) False slco3a1
XM_034305391.1 mRNA downstream 80532 16838875 ~ 16928642 (+) True srpra
XM_034305393.1 mRNA downstream 80533 16838876 ~ 16928642 (+) False srpra
XM_034305394.1 mRNA downstream 80533 16838876 ~ 16928642 (+) False srpra
TU118951 other upstream 157072 16600257 ~ 16601067 (+) True G100345
TU118902 other upstream 408352 16349457 ~ 16349787 (+) True G100306
XR_004578337.1 other upstream 1412171 15300482 ~ 15345968 (+) False carmil2
TU117779 other upstream 2233659 14520801 ~ 14524480 (+) True G99341
XR_004578308.1 other upstream 2717357 14035230 ~ 14040782 (+) False skor1b
XR_004578324.1 other downstream 642083 17400426 ~ 17443468 (+) False LOC117597546
XR_003403945.2 other downstream 731203 17489546 ~ 17493092 (+) False LOC113539654
XR_004578373.1 other downstream 1789582 18547925 ~ 18548289 (+) True LOC117597608
TU120088 other downstream 1793103 18551446 ~ 18551724 (+) True G101403
TU120104 other downstream 1840371 18598714 ~ 18599375 (+) True G101419

Expression Profile