RNA id: TU118977


Basic Information

Item Value
RNA id TU118977
length 735
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G100370
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 16822368 ~ 16823102 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cctaatggttagagtctcggacttgtaacccgaaggtgaacctgaaggttgtgggttcgagtctcaggtccggcagggattgtaggtggggggagtgaatgaccagtgctctctcccaccctcaataccacgactgaggtgagacccttgagcaaggcaccgaacccccaactgctccccgggcgccgcagtaaaaaggctgcccactgctgtgtgtgttcactaatgtgtgtgcacttggatgggttaaatgcagagcacaaattccgaatatgggtcaccatacttggccacacgtcacttcacttcacttcaatacATGGTCAATAGTACACTCTCAGCTATAAGACAAGGTTATCATTGAAACATTGCCATCAAATTTGTTATGTCCCAGATCCCACTCCCTGCATAGGCAAATGAAATGACCCGACCCATACCCACCAGAAGGGGGTGCTATAATGAATGACTTTTTATGTCAGCAACAACTATAGGGAATAGTAAAACGTTCTATATCAGCAGAATTCCTCAGTCCTGCATCTTTTTGCCATATGGTTTAATTACTTTTCACTGATGTGCTTTGTGCCATTTTCTAAAAAGCTTTCTTTTTCAAACTAGTCCTCATCTGCTCAGCATACAATATGAAATCTGAAAACAAtactaaaacaattttaattagCCAAACCGTTTGGCTGCTACAGGTCAGTGAAATTTTAGACCATTGCATGCATTAAAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118968 lncRNA upstream 61834 16760311 ~ 16760534 (+) True G100362
TU118966 lncRNA upstream 64025 16758139 ~ 16758343 (+) True G100360
XR_004578304.1 lncRNA upstream 66389 16751007 ~ 16755979 (+) True LOC117597522
TU118986 lncRNA downstream 115633 16938735 ~ 16939728 (+) True G100379
TU119104 lncRNA downstream 148728 16971830 ~ 16972238 (+) True G100480
TU119131 lncRNA downstream 187613 17010715 ~ 17024228 (+) True G100499
XR_004578316.1 lncRNA downstream 214949 17038051 ~ 17039276 (+) True LOC117597540
TU119127 lncRNA downstream 264852 17087954 ~ 17090706 (+) True G100495
XM_026927242.2 mRNA upstream 6096 16764695 ~ 16816272 (+) True slco3a1
XM_026927243.2 mRNA upstream 7919 16764695 ~ 16814449 (+) False slco3a1
XM_026927763.2 mRNA upstream 141833 16657601 ~ 16680535 (+) True rgma
XM_034305372.1 mRNA upstream 311389 16500760 ~ 16510979 (+) True LOC113534621
XM_034305369.1 mRNA upstream 562195 16259445 ~ 16260173 (+) True LOC113534692
XM_034305391.1 mRNA downstream 15773 16838875 ~ 16928642 (+) True srpra
XM_034305393.1 mRNA downstream 15774 16838876 ~ 16928642 (+) False srpra
XM_034305394.1 mRNA downstream 15774 16838876 ~ 16928642 (+) False srpra
XM_034305392.1 mRNA downstream 16567 16839669 ~ 16928642 (+) False srpra
XM_026935710.2 mRNA downstream 155833 16978935 ~ 16983976 (+) True ppp1r15b
TU118951 other upstream 221301 16600257 ~ 16601067 (+) True G100345
TU118902 other upstream 472581 16349457 ~ 16349787 (+) True G100306
XR_004578337.1 other upstream 1476400 15300482 ~ 15345968 (+) False carmil2
TU117779 other upstream 2297888 14520801 ~ 14524480 (+) True G99341
XR_004578308.1 other upstream 2781586 14035230 ~ 14040782 (+) False skor1b
XR_004578324.1 other downstream 577324 17400426 ~ 17443468 (+) False LOC117597546
XR_003403945.2 other downstream 666444 17489546 ~ 17493092 (+) False LOC113539654
XR_004578373.1 other downstream 1724823 18547925 ~ 18548289 (+) True LOC117597608
TU120088 other downstream 1728344 18551446 ~ 18551724 (+) True G101403
TU120104 other downstream 1775612 18598714 ~ 18599375 (+) True G101419

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00058103 True 81482 lncRNA 0.38 1 NC_007115.7 11610718 ~ 11692199 (-)