RNA id: TU119015


Basic Information

Item Value
RNA id TU119015
length 773
lncRNA type inter_gene
GC content 0.45
exon number 6
gene id G100406
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 16741446 ~ 16751026 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTTTGATGGTTAGAACCACTCACCTGTCCTGATTCTTCCTGATCGGCCATGTTGAAGAGCCTTTATAATATGCTAGTTCCGTGCAAAATGACTGTTCCCGCCCGGATTGTAAAACAAAACGTGATTGGATGGAGCGACACTGTGCTACGATTGAATGCACCAGTAACCGGAAGTTGTGGCCCTGACGCCCAAGTCGAGGCTCCGCCCACTCTAACAGGAGAACAGCACAGGCTGAGCGAGAGAAGAAGGACAACGGGGAAACAGAGCGACTGCGGCTGAGCGAAATGGCGAGAAGACGACGTTGCGCTGACAGGTCCGAGATAAAATGCAACAAATTTGGCGAAAAAACACGATGTCTTTCTGTTCAGACGACAAAGCTGGACATCGCTTTTGGATCTTGGCAGACACCACTGGTCAAAAGATGATGCAAGAATTCTTAGTTCCATACTATAATTATGAACCTGTTCCACATACATGCAAAGATGGAGGAAGAAAATGAATGGAACAATCTGGTCATCTGTCGGTTTGTGGACGTGGTCATGAGAGTGCTGGGAAAAGAATACGGCTTGACCCCCCTACTGGACAAACAAGTGGAGACTACAGCTTTATCAGGAAGATGGCGGCTCTGATTTTTGCTTttggattacattttttttaaatgtaactttgaTTGCAGTTGTATTCTGCTGGTAAATGTGTCTAAATGCCCCACCCAATGTTTGATAACGTTTTGTTAAAATTTTACaaagttgtttttgtttcagctgCTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119012 lncRNA downstream 72943 16668198 ~ 16668540 (-) True G100405
TU119009 lncRNA downstream 75429 16665837 ~ 16666054 (-) True G100402
TU119006 lncRNA downstream 83574 16657646 ~ 16657909 (-) True G100399
TU119004 lncRNA downstream 86246 16654940 ~ 16655237 (-) True G100397
TU119003 lncRNA downstream 125259 16615908 ~ 16616224 (-) True G100396
TU119028 lncRNA upstream 9519 16760545 ~ 16761166 (-) True G100414
TU119030 lncRNA upstream 10906 16761932 ~ 16762144 (-) True G100416
TU119057 lncRNA upstream 65322 16816348 ~ 16818831 (-) True G100439
TU119058 lncRNA upstream 65322 16816348 ~ 16817847 (-) False G100439
TU119059 lncRNA upstream 66923 16817949 ~ 16819150 (-) False G100439
XM_034304994.1 mRNA downstream 412 16680922 ~ 16741071 (-) False chd2
XM_034304996.1 mRNA downstream 413 16680922 ~ 16741070 (-) False chd2
XM_034304995.1 mRNA downstream 414 16680922 ~ 16741069 (-) False chd2
XM_034304993.1 mRNA downstream 416 16680922 ~ 16741067 (-) False chd2
XM_034304992.1 mRNA downstream 416 16680922 ~ 16741067 (-) True chd2
XM_034305009.1 mRNA upstream 187865 16938891 ~ 16944430 (-) True LOC117597525
XM_026935694.2 mRNA upstream 337615 17088641 ~ 17307902 (-) False LOC113539712
XM_026935693.2 mRNA upstream 337615 17088641 ~ 17307902 (-) True LOC113539712
XM_026935696.2 mRNA upstream 337615 17088641 ~ 17246467 (-) False LOC113539712
XM_026935698.2 mRNA upstream 337615 17088641 ~ 17233703 (-) False LOC113539712
TU118530 other downstream 1386846 15347166 ~ 15354637 (-) True tmem170a
XR_003403523.2 other downstream 2394475 14335936 ~ 14347008 (-) False dennd11
XR_003403533.2 other downstream 2952636 13788751 ~ 13788847 (-) True LOC113534839
XR_003403534.1 other downstream 2953284 13788102 ~ 13788199 (-) True LOC113534840
XR_003403537.1 other downstream 2953697 13787657 ~ 13787786 (-) True LOC113534844
XR_004578368.1 other upstream 1335629 18086655 ~ 18086971 (-) True LOC117597604
TU119855 other upstream 1436421 18187447 ~ 18196806 (-) True G101178
XR_003402833.1 other upstream 2599736 19350762 ~ 19350943 (-) True LOC113527011
XR_003402829.1 other upstream 3229043 19980069 ~ 19980259 (-) True LOC113527007
TU121422 other upstream 4202576 20953602 ~ 20966910 (-) True G102566

Expression Profile