RNA id: TU119058


Basic Information

Item Value
RNA id TU119058
length 1500
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G100439
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 16816348 ~ 16819150 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tcaaaaaaattaaaggaacactttgaaaacacatcatatCTCaaaggggaaaaatatcatgctggatatctatactgatatggactgggtaatgtgttaggaacgaaaggatgccacatcatttgatggaaatgaaaattatcaacctacagaggcctgaattcaaagacaccccgaaaatcaaagtgaaaaaatgatgcagcaagctagtccattttgctgaaatttcaatgcagcaactcaaaatggaactcagtagtttgtatggcccccacgtgcttgtatgtatgcctgacaacgtcggggcatgctcctaatgaaACGAcagatggtgtcctggggtatttcctcccagatctggaccagggcagtactgagctcctggacagtctgaggtgcaacctggcagcgtcggatggaccgaaacgtaatgtcccagaggtattctattggatttaggtcaggcgagcGTCGGGGCCATTCagtggtatcaattccttcatcctccaggaactgcttgcatactctcgccacatgaggccgggcattgtcgtgcaccaggaggaacccaggacccactgcaccagcatagggtctgacaatgggtccaaggatttcatcccgatacctaatggcagtcagggtgccattgtctagcctgtagaggtctgtgcgtccctccatggatatgcctccccagaccatcactgacccaccaccaaaccggtcatgctgaacgatgttacaggcagtATAACattctccacggcttctccagaccctttcacgtctgtcacgTGCTctgggtgaacctgctctcatctgtgaaaagcacagggcaccagtggcggacctgccaattctggtgttcaatggcaaatgccaatcgagctccatGGTGCCGGACAGTGAGCATGTGGCCCACTAGAGGACATTGGGCCCTCAGGCcgccctcatgaagtctgtttctgattgtttggtcagagacatttacaccagtagcctgctggaggtcattttgtagggctctggcagtgctcatcctgttcctccttgcacaaaggagcagataccggtcctgctgatgggttaaggaccatTTTCcacggccctgtccagctctcctagagtaaatgcctgtctcctggaatctcctccatgctcttgagactgtgctgggagacacagcaaaccttctggcaatggcacgtattgatgtgccatcctggaggagttggactgcctgtgcaacctctgtagccaaatgcaaaactagtgaaaaacagtcagaaaagatgagtagggaaaaaaatgtcagtggcctccacctgtaaaaccattcctgttttgggggttgtctcattgttgcccatctagtgcacctgttgttaatttcattaacactaaagcagctgaaactgattaacaaccccctctgctacttaactgaccagatcaatatcccaggagtttaactgacttgatgctataACTCTGAtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119030 lncRNA downstream 54204 16761932 ~ 16762144 (-) True G100416
TU119028 lncRNA downstream 55182 16760545 ~ 16761166 (-) True G100414
TU119015 lncRNA downstream 65322 16741483 ~ 16751026 (-) False G100406
TU119059 lncRNA upstream 102 16817949 ~ 16819150 (-) False G100439
TU119065 lncRNA upstream 7357 16825204 ~ 16825599 (-) True G100444
TU119069 lncRNA upstream 21069 16838916 ~ 16840109 (-) True LOC117597576
XR_004578338.1 lncRNA upstream 21168 16839015 ~ 16839518 (-) False LOC117597576
TU119022 lncRNA upstream 102720 16920567 ~ 16933822 (-) True G100408
XM_034304994.1 mRNA downstream 75277 16680922 ~ 16741071 (-) False chd2
XM_034304996.1 mRNA downstream 75278 16680922 ~ 16741070 (-) False chd2
XM_034304995.1 mRNA downstream 75279 16680922 ~ 16741069 (-) False chd2
XM_034304993.1 mRNA downstream 75281 16680922 ~ 16741067 (-) False chd2
XM_034304992.1 mRNA downstream 75281 16680922 ~ 16741067 (-) True chd2
XM_034305009.1 mRNA upstream 121044 16938891 ~ 16944430 (-) True LOC117597525
XM_026935694.2 mRNA upstream 270794 17088641 ~ 17307902 (-) False LOC113539712
XM_026935693.2 mRNA upstream 270794 17088641 ~ 17307902 (-) True LOC113539712
XM_026935696.2 mRNA upstream 270794 17088641 ~ 17246467 (-) False LOC113539712
XM_026935698.2 mRNA upstream 270794 17088641 ~ 17233703 (-) False LOC113539712
TU118530 other downstream 1461711 15347166 ~ 15354637 (-) True tmem170a
XR_003403523.2 other downstream 2469340 14335936 ~ 14347008 (-) False dennd11
XR_003403533.2 other downstream 3027501 13788751 ~ 13788847 (-) True LOC113534839
XR_003403534.1 other downstream 3028149 13788102 ~ 13788199 (-) True LOC113534840
XR_003403537.1 other downstream 3028562 13787657 ~ 13787786 (-) True LOC113534844
XR_004578368.1 other upstream 1268808 18086655 ~ 18086971 (-) True LOC117597604
TU119855 other upstream 1369600 18187447 ~ 18196806 (-) True G101178
XR_003402833.1 other upstream 2532915 19350762 ~ 19350943 (-) True LOC113527011
XR_003402829.1 other upstream 3162222 19980069 ~ 19980259 (-) True LOC113527007
TU121422 other upstream 4135755 20953602 ~ 20966910 (-) True G102566

Expression Profile