RNA id: TU119104


Basic Information

Item Value
RNA id TU119104
length 409
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G100480
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 16971830 ~ 16972238 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gGAATGTTTCACAATATGGTATAAAGCATTATCTATCTTGCATTTATTCAATTAGAACTGTTTTATTGCAAAAAATACCTTAACAAACGTGAGGGGGCTCGCCTGTAGATCTGACCTGTAACTTGGCCTTTTGACATCACCTGATTGTCTCCATGGAGATAGATAAGTTTTATGCCATACTGTGGAACATTCCAGACAGGGAGAGTGTGGGTTGTTGTTGTGTGCCTGGCACATAAACTTTGTTTCAAACTTTGAAAACTTTGTTTGAATAAAAATTGTTGTTTACAGCTATTGATGAtggctgttaaataaatttctcaAGTTATATTTTGCTCTCTTGTCTTTTCTCAAGATGTGTTTTTGAGATTTACCACAATAacttcattattaaaacataaaaatacagcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118986 lncRNA upstream 32102 16938735 ~ 16939728 (+) True G100379
TU118977 lncRNA upstream 148728 16822368 ~ 16823102 (+) True G100370
TU118968 lncRNA upstream 211296 16760311 ~ 16760534 (+) True G100362
TU118966 lncRNA upstream 213487 16758139 ~ 16758343 (+) True G100360
XR_004578302.1 lncRNA upstream 215851 16753234 ~ 16755979 (+) False LOC117597522
TU119131 lncRNA downstream 38477 17010715 ~ 17024228 (+) True G100499
XR_004578316.1 lncRNA downstream 65813 17038051 ~ 17039276 (+) True LOC117597540
TU119127 lncRNA downstream 115716 17087954 ~ 17090706 (+) True G100495
TU119167 lncRNA downstream 178715 17150953 ~ 17152232 (+) True G100532
TU119168 lncRNA downstream 182468 17154706 ~ 17154971 (+) True G100533
XM_034305391.1 mRNA upstream 43188 16838875 ~ 16928642 (+) True srpra
XM_034305393.1 mRNA upstream 43188 16838876 ~ 16928642 (+) False srpra
XM_034305394.1 mRNA upstream 43188 16838876 ~ 16928642 (+) False srpra
XM_034305392.1 mRNA upstream 43188 16839669 ~ 16928642 (+) False srpra
XM_026927243.2 mRNA upstream 157381 16764695 ~ 16814449 (+) False slco3a1
XM_026935710.2 mRNA downstream 6697 16978935 ~ 16983976 (+) True ppp1r15b
XM_026935369.2 mRNA downstream 69119 17041357 ~ 17065819 (+) True blm
XM_026935368.2 mRNA downstream 69122 17041360 ~ 17065819 (+) False blm
XM_026935366.2 mRNA downstream 69131 17041369 ~ 17065819 (+) False blm
XM_026935370.2 mRNA downstream 69131 17041369 ~ 17065819 (+) False blm
TU118951 other upstream 370763 16600257 ~ 16601067 (+) True G100345
TU118902 other upstream 622043 16349457 ~ 16349787 (+) True G100306
XR_004578337.1 other upstream 1625862 15300482 ~ 15345968 (+) False carmil2
TU117779 other upstream 2447350 14520801 ~ 14524480 (+) True G99341
XR_004578308.1 other upstream 2931048 14035230 ~ 14040782 (+) False skor1b
XR_004578324.1 other downstream 428188 17400426 ~ 17443468 (+) False LOC117597546
XR_003403945.2 other downstream 517308 17489546 ~ 17493092 (+) False LOC113539654
XR_004578373.1 other downstream 1575687 18547925 ~ 18548289 (+) True LOC117597608
TU120088 other downstream 1579208 18551446 ~ 18551724 (+) True G101403
TU120104 other downstream 1626476 18598714 ~ 18599375 (+) True G101419

Expression Profile