RNA id: TU119127


Basic Information

Item Value
RNA id TU119127
length 2379
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G100495
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 17087954 ~ 17090706 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tatatatatatatatatatatatatatatatataatacacacacacacacacacacacactcatacccgTACCctacatatttacatatccACCCAGTCACTAGGGACCACCCCACTTTTGGGAAGAACCTACCACAAGAACAGATTCCCTGCAGGGTACTATGGACACAccattcaaaatattaaaaatgataagatTTTACCATTAAATAATTTTCCCCTACACCCctaagaaaggaaaaaaagggtCAAACTAAGCTTAATGAAATCTGAGATATTCTGTGATAGTGTTTAAACAATTTTcaatatcttgttttttttttttttttgcattttttgcttTTAGAAGTTTTGGCTATAAATCCACAATGGAAATTCTACAATGGCTGCaaaatgaatgtgcacatatTCATCATTCAGTTTTATCATGTGAGGACATAGCCTCAAGGTTCAaccataataaataaacaaatgtctgTCATAGCAAACAAATAATAGGTGGGTGTTAGGAGCTTGAACTGGATAGAGGATCATATGACCTGTATATTatatgaaaatctgaaaatgttcataagGCCATATAGCACAACATCAGAAATTAGTCCACTTGTTTACATTCTGTACCTCATTCAACTTCCAACATTATCAAAGTTTAGGGAGTAACGCATACCCGATATCGATTAAACTAGCTGAGGTGTTGGGTTCAAATTGGCTATTGGTTAGCCTGATCACACTACGCCCTTTCACCCAAACCATTTAACCATTAAATAATTTTCCCTTACTCCCCTCACAAAAAGATAGTCACAAACTTTCTCACACTCCTTTGTTCTTGCATATGCGAATGCTCAGAAGAacttgctcattttttttgtctgttcaaATTCACATTCAATATACACAAAAGATTCTTTTAAGAGCTACATACTgaattttccaaatattttaagtctaacacacacacacacaaaaacattgcCCCTCTACAGGCCTGGGTCACATGGCAGAACACTACATTTACTGGTTGCAacggtcagtttttttttttccatatcgCCTTCAAAATAATCTGTCAAAATACTTCAGCGTACCCACACCATTTATTGATTAGCAACATTCAACACTCACTCCACTAACAGTCCACCTCTTGAACCAACTTCTTGAACCACGTGCTAAGTGAATTGCTGCTCATTAATTAATCAGTGCTTGAGTTATTTTCTTTAAGGTATAGCACcctaataaattataatatataaattataattagaaATTGTATAAATTATTAACAGGCAAATGAGGGAGGAATTGAGAGTGAATTCTGTTGAAGGGATTCCTTGTCTACCAAAAATGTTCAAATCCATTTCTTCATAAACTCCATTTTTTTCCAACCTCACTTAAACAATTGGCTTGTAGCTTCTTGTGCCACCTCCTAAAAGATTTACCATAAATGCATAATGAACAGTAATGAAGTATGTGTTATAGTTAAATAAACTCAAGTTATTTCTTgttcttctgttttgttttgttttttgttgttccaaaagggaaaataatcaaaaaaggTATCATCtcataaaaataatgataaaagaaagaaggtataaaaaatatataacagatGTACAAACAAtgtcaaaacacaaaaatagaaGGGCTAAAGGGAAGAAGAAGATGGCGAGCTCTTGGCACTTTGCCAGAATCAGGAGCTGCGTTTTGTTGCATTCAAGCTTGCTgccccattctctctctctctctctctctcatccataTTTCACTTGATTCACTCTTTTCTGCACTTTATTCTTATTTGCTAATGAGCAGGCCCCCCACCCAGTGCAGCTTACAGGCAAACCACCGTCGGAGGGGACAAAAGTATTCGTAATGAAACTGCTCAAACTCAGGTGTTTGGCGGATATCACGCAAAAAGGCCACATCCAGATCAGATTCTGTGAgaatgatgaggaggaggagcaaaACAAAAAGGAGTCCGATGGTTACGAGGAGCAAACGGAGGACGCTTAGGACAAACTTGTTCACGTCTTCCACCTCTGTGACGACAGGCACCACCAGTGCAGTGCTTGCTGTTGTTCCTGGTTCACCTGGTTCTCTCACCACCACTGTGCTCTGCTCagcctccttctcctcctcagtACTGCAGGGAGTTCCATTAGCATGACGTGTGGTGACAGCAGCTGGCTCCGGACTGAGCTCGGTCACTGGTGTAGGCAGAACGCTGTCCGATGGGCTGTAGTTGTCCTCAGCAATTACTTCTGCAACATTGCCATACTCATTCACCTGGCTGTGGGAATGAGGTATGAACGAATCGCTATGTGAGATCGAATGCACAGGTGTGGAGTGTGCACTGTCCCTCAGTGATTCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578316.1 lncRNA upstream 48678 17038051 ~ 17039276 (+) True LOC117597540
TU119131 lncRNA upstream 63726 17010715 ~ 17024228 (+) True G100499
TU119104 lncRNA upstream 115716 16971830 ~ 16972238 (+) True G100480
TU118986 lncRNA upstream 148226 16938735 ~ 16939728 (+) True G100379
TU118977 lncRNA upstream 264852 16822368 ~ 16823102 (+) True G100370
TU119167 lncRNA downstream 60247 17150953 ~ 17152232 (+) True G100532
TU119168 lncRNA downstream 64000 17154706 ~ 17154971 (+) True G100533
TU119180 lncRNA downstream 85452 17176158 ~ 17176370 (+) True G100544
TU119380 lncRNA downstream 399440 17490146 ~ 17493002 (+) False LOC113539654
TU119517 lncRNA downstream 899696 17990402 ~ 18068569 (+) True G100846
XM_026935369.2 mRNA upstream 22135 17041357 ~ 17065819 (+) True blm
XM_026935368.2 mRNA upstream 22135 17041360 ~ 17065819 (+) False blm
XM_026935366.2 mRNA upstream 22135 17041369 ~ 17065819 (+) False blm
XM_026935370.2 mRNA upstream 22135 17041369 ~ 17065819 (+) False blm
XM_026935367.2 mRNA upstream 22135 17041369 ~ 17065819 (+) False blm
XM_026935421.2 mRNA downstream 272419 17363125 ~ 17378340 (+) False slc28a1
XM_026935420.2 mRNA downstream 272482 17363188 ~ 17378340 (+) True slc28a1
XM_034305185.1 mRNA downstream 309720 17400426 ~ 17443468 (+) False LOC117597546
XM_034305187.1 mRNA downstream 309720 17400426 ~ 17443468 (+) False LOC117597546
XM_034305184.1 mRNA downstream 309720 17400426 ~ 17403388 (+) True LOC117597546
TU118951 other upstream 486887 16600257 ~ 16601067 (+) True G100345
TU118902 other upstream 738167 16349457 ~ 16349787 (+) True G100306
XR_004578337.1 other upstream 1741986 15300482 ~ 15345968 (+) False carmil2
TU117779 other upstream 2563474 14520801 ~ 14524480 (+) True G99341
XR_004578308.1 other upstream 3047172 14035230 ~ 14040782 (+) False skor1b
XR_004578324.1 other downstream 309720 17400426 ~ 17443468 (+) False LOC117597546
XR_003403945.2 other downstream 398840 17489546 ~ 17493092 (+) False LOC113539654
XR_004578373.1 other downstream 1457219 18547925 ~ 18548289 (+) True LOC117597608
TU120088 other downstream 1460740 18551446 ~ 18551724 (+) True G101403
TU120104 other downstream 1508008 18598714 ~ 18599375 (+) True G101419

Expression Profile