RNA id: TU119380


Basic Information

Item Value
RNA id TU119380
length 862
lncRNA type sense_over
GC content 0.46
exon number 2
gene id LOC113539654
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 17489546 ~ 17493092 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCAACAAATTACGGCGCGCTAGACTCGATACAACTCTGGACTcgaaaataatgtaataatttggCGATATTTAGCTGGGGTTACTAACCGCAGCGTAAAAAGGAAAGTCGCCCCAAACAAGAAAGGAgaccaagaaaagaaaagcagaagttTTAATACCAAGTGGCAAACTGGGCACGAATGGCTCGTCTGTGACTCCACAAATCAGATAATGTACTGTGAGGTACAACTTCAAACTTCTCTTTCGAAACGCTCATGCTGTGGCGAAAAAAGACCGTGGTTTCAGGAAGCGCGGCTGGATTAACCGCAGGGAAAAAAGGGAGACCCTTCTCGGATTTCACATGGATGTaCTTTGGAGACACTGACGTGGAAGAGCTCACACATCATTTCAAGCCTCTTCTCATGTCAGCTGGAGTGGATGTTGACTTGATCCCGGATCAATGGACTGTACTAAAGTCACGACTGTACCAGCAAATGGGGCCCTTAGAGAAGATAACCTGACCTGCTGTGAACAGGATGCTGGGCCACGAGTGTCCTGATATTCTTCAACTTTTTGACCTCATACTTGCCATCCCATCATCTTCTGCTGACTGTGAACAAGGTTTTAGTTTAATGAAGTTGGTGGCCTGCAAGACTGAAGGTTGAGACGCTCTGTGACCTTCTTACTGTCCAGCTAAACTCTCCTGATATCATGCACTTTGATCCCAACAATGCCATTGATATATGGCATGCAGAGAGTTTACGCTCCCGCAGACCAGAGTTCACATGCAAAGACCGAGCTGAAAAACAGCACTTCCTTAGTGACACAGTGGACTCTGAGGATGAGAGCTCTGAGGACCTCTGAGCATTTGTTTAAGCGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119180 lncRNA upstream 313776 17176158 ~ 17176370 (+) True G100544
TU119168 lncRNA upstream 335175 17154706 ~ 17154971 (+) True G100533
TU119167 lncRNA upstream 337914 17150953 ~ 17152232 (+) True G100532
TU119127 lncRNA upstream 399440 17087954 ~ 17090706 (+) True G100495
XR_004578316.1 lncRNA upstream 450870 17038051 ~ 17039276 (+) True LOC117597540
TU119517 lncRNA downstream 497400 17990402 ~ 18068569 (+) True G100846
TU119860 lncRNA downstream 712090 18205092 ~ 18205814 (+) True G101183
XR_004578365.1 lncRNA downstream 768721 18261723 ~ 18277820 (+) True LOC117597602
TU119876 lncRNA downstream 768739 18261741 ~ 18277823 (+) False LOC117597602
XR_004578363.1 lncRNA downstream 856122 18349124 ~ 18358091 (+) True LOC117597601
XM_034305185.1 mRNA upstream 46678 17400426 ~ 17443468 (+) False LOC117597546
XM_034305187.1 mRNA upstream 46678 17400426 ~ 17443468 (+) False LOC117597546
XM_034305186.1 mRNA upstream 46678 17400450 ~ 17443468 (+) False LOC117597546
XM_034305184.1 mRNA upstream 86758 17400426 ~ 17403388 (+) True LOC117597546
XM_026935421.2 mRNA upstream 111806 17363125 ~ 17378340 (+) False slc28a1
XM_026935550.2 mRNA downstream 37432 17530434 ~ 17541653 (+) True sec11a
XM_026935202.2 mRNA downstream 88881 17581883 ~ 17602174 (+) True kti12
XM_026932717.2 mRNA downstream 268515 17761517 ~ 18188484 (+) True reln
XM_026932718.2 mRNA downstream 268515 17761517 ~ 18188484 (+) False reln
XM_034305511.1 mRNA downstream 268515 17761517 ~ 18169269 (+) False reln
XR_004578324.1 other upstream 46678 17400426 ~ 17443468 (+) False LOC117597546
TU118951 other upstream 889079 16600257 ~ 16601067 (+) True G100345
TU118902 other upstream 1140359 16349457 ~ 16349787 (+) True G100306
XR_004578337.1 other upstream 2144178 15300482 ~ 15345968 (+) False carmil2
TU117779 other upstream 2965666 14520801 ~ 14524480 (+) True G99341
XR_004578373.1 other downstream 1054923 18547925 ~ 18548289 (+) True LOC117597608
TU120088 other downstream 1058444 18551446 ~ 18551724 (+) True G101403
TU120104 other downstream 1105712 18598714 ~ 18599375 (+) True G101419
TU120119 other downstream 1245341 18738343 ~ 18739998 (+) True G101434
TU120151 other downstream 1300633 18793635 ~ 18794273 (+) True G101466

Expression Profile