RNA id: XM_026935606.2


Basic Information

Item Value
RNA id XM_026935606.2
length 1889
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC113539654
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 17489546 ~ 17493092 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAGACTTGATGAGCATaagtgacttttttaaaaaaaaacattaaaaatagtaATATGTCCAAACTTTCAACCAGTACTATATACATGGTTATCTTTGTTAAACACTGAATATGTTCAGtaatttttacttgttttatgaCAGTTTAGACTTGACAGTCAGAAAGGTTTAGATGTAGGGAAAACATACAGGAATGTCAATCAAGCAAAGCTATTCAAGCACTGCATAGcggaggaagagagaagaaagataAGGGAGAGTGTGTCCACTGCGAAATTCATCTCTGTGATGACAAATGGATCTGTAGACTCTTCAGTTACAGAAGAGGAGATGGTGTACGTAAGGACCGCAAAGGCTGGGCAGGTCAGAGTTTATTTTGCTGGTGTTCAGGCAGTCTCTAGGCCAGACGCCAGCCACATTGCTGAGGCAGTGAGTAGCATTATGGACAGCATATCAGGCAATAGCACTCGGTGGAAGAGAAAACTTGTAGCCATAACCACAGATGGAGCTGCGGTGATGACTGGTGAGAAGAACGGTGTGGTCACAAGAATCCGGGGAGACAGGTCTTATGTGTTGGGCATCCATTGCATGGCCCATAGGCCTGAGCTAGCTTACGCTGATGCAGTGAAACAAAGTCTGATGGCTAGGAAGGTTGAAGACCTAATGACTGGTCTTTATACTTTGTACCACAAGAGCTCAGTAAACAGAGATAGTCTCAAGGCAAGCTTTGAGGAGCTCAACATGAAGCCCTTGATTCCAACCAGAATTGGTGGAACCCGGTGGGTGGCACACATCCTCAGGGCTTTAGACCATTTCCTGAGAGGCTATGCAGGAATTACACATCAGTTGGAAAAGACAATGCAGACTGATGTCAAACTTAAGGCCAAGGCCAAAGGATTCCTTAATATCATCAATGATGGTACACTTGTAAAGTTCTCCTGCCTCCTGTATGACATTTTGACACACCTCAGCAACCTGTCAGTCACCCTGCAGAAGTCATTAGTGACTTTGGCTGAGGCTCAAAGCTGCCTCTCTTCCACTCAGGCAGTTTTAAAGAAGTATAAGTCAAGACTGGGGCCTAAGTTGAGGTCAGTGCTGGAAGCTGATACATATGAGAACGTCCACCTGAAGCCTCCTAATGCTGAACAGCTGGATATGGCCAAGAAACAGGTTATAGATTCTCTGTGCCAGTGCCTCACTAAAAGACTTGGGGATGTAAGCAGTGTTGTCCTGAAGGCTATGCGACTGATCAGTTTCCAATGCTGGCCAGATGCAGACATGAGTACAGaCTTTGGAGACACTGACGTGGAAGAGCTCACACATCATTTCAAGCCTCTTCTCATGTCAGCTGGAGTGGATGTTGACTTGATCCCGGATCAATGGACTGTACTAAAGTCACGACTGTACCAGCAAATGGGGCCCTTAGAGAAGATAACCTGACCTGCTGTGAACAGGATGCTGGGCCACGAGTGTCCTGATATTCTTCAACTTTTTGACCTCATACTTGCCATCCCATCATCTTCTGCTGACTGTGAACAAGGTTTTAGTTTAATGAAGTTGGTGGCCTGCAAGACTGAAGGTTGAGACGCTCTGTGACCTTCTTACTGTCCAGCTAAACTCTCCTGATATCATGCACTTTGATCCCAACAATGCCATTGATATATGGCATGCAGAGAGTTTACGCTCCCGCAGACCAGAGTTCACATGCAAAGACCGAGCTGAAAAACAGCACTTCCTTAGTGACACAGTGGACTCTGAGGATGAGAGCTCTGAGGACCTCTGAGCATTTGTTTAAGCGAAATTcagattttataataaataataataaaatatgtaataaatgtttataaataaagatgtgACATGGTTAATCTGGTTATGGACATCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119180 lncRNA upstream 314499 17176158 ~ 17176370 (+) True G100544
TU119168 lncRNA upstream 335898 17154706 ~ 17154971 (+) True G100533
TU119167 lncRNA upstream 338637 17150953 ~ 17152232 (+) True G100532
TU119127 lncRNA upstream 400163 17087954 ~ 17090706 (+) True G100495
XR_004578316.1 lncRNA upstream 451593 17038051 ~ 17039276 (+) True LOC117597540
TU119517 lncRNA downstream 497310 17990402 ~ 18068569 (+) True G100846
TU119860 lncRNA downstream 712000 18205092 ~ 18205814 (+) True G101183
XR_004578365.1 lncRNA downstream 768631 18261723 ~ 18277820 (+) True LOC117597602
TU119876 lncRNA downstream 768649 18261741 ~ 18277823 (+) False LOC117597602
XR_004578363.1 lncRNA downstream 856032 18349124 ~ 18358091 (+) True LOC117597601
XM_034305185.1 mRNA upstream 47401 17400426 ~ 17443468 (+) False LOC117597546
XM_034305187.1 mRNA upstream 47401 17400426 ~ 17443468 (+) False LOC117597546
XM_034305186.1 mRNA upstream 47401 17400450 ~ 17443468 (+) False LOC117597546
XM_034305184.1 mRNA upstream 87481 17400426 ~ 17403388 (+) True LOC117597546
XM_026935421.2 mRNA upstream 112529 17363125 ~ 17378340 (+) False slc28a1
XM_026935550.2 mRNA downstream 37342 17530434 ~ 17541653 (+) True sec11a
XM_026935202.2 mRNA downstream 88791 17581883 ~ 17602174 (+) True kti12
XM_026932717.2 mRNA downstream 268425 17761517 ~ 18188484 (+) True reln
XM_026932718.2 mRNA downstream 268425 17761517 ~ 18188484 (+) False reln
XM_034305511.1 mRNA downstream 268425 17761517 ~ 18169269 (+) False reln
XR_004578324.1 other upstream 47401 17400426 ~ 17443468 (+) False LOC117597546
TU118951 other upstream 889802 16600257 ~ 16601067 (+) True G100345
TU118902 other upstream 1141082 16349457 ~ 16349787 (+) True G100306
XR_004578337.1 other upstream 2144901 15300482 ~ 15345968 (+) False carmil2
TU117779 other upstream 2966389 14520801 ~ 14524480 (+) True G99341
XR_004578373.1 other downstream 1054833 18547925 ~ 18548289 (+) True LOC117597608
TU120088 other downstream 1058354 18551446 ~ 18551724 (+) True G101403
TU120104 other downstream 1105622 18598714 ~ 18599375 (+) True G101419
TU120119 other downstream 1245251 18738343 ~ 18739998 (+) True G101434
TU120151 other downstream 1300543 18793635 ~ 18794273 (+) True G101466

Expression Profile