RNA id: XR_004578363.1


Basic Information

Item Value
RNA id XR_004578363.1
length 1777
lncRNA type inter_gene
GC content 0.46
exon number 7
gene id LOC117597601
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 18349124 ~ 18358091 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCATTCAACACATCTTCAGAAGTCTCtaccaacatcttcaaggagCTCTCTTCCATCAACATCTGCAGGATTCCCATTCTCAATCTTCAGAGTTCGTGTCACCTAACTACTCCAGGAGAGTtctcttcaactaacagctcaagaAGTTCTTGCCCCTCGTCATCACAAGGAGATGttcatcgtcatcgtcatcaCACATCCGAGACTCCACATCCAGCCTGGTTCCTGCAGAGCCTCCAACTCCCGTCTTTGCACCGCTGTGAACCACtcatcaaagttttgcaacctgCCTAAGAGACTCCGCCAGGTCCGCACCTCATTCTGTTTATGAgcctcattggtctttcgagacgctaTATAAGGACAACTagaccgccgaccaatcaacattGCCGAAAACCCCTCTAAACAACaacgcaacgagggaatccctggcaacacaaacgcaaGTTCACATCTCACCCTACCTGCCTGCCTGCACTCTGCTATGCCCAGCCCTGATTCACCTCCCCTGTGGTCCACAGACAGAGTATCTGATTCCTATGCTGCTGACCCGAGATTGAGATCTGACCTTAACAGTAACACTAGCCACGCTTGCACTCCGCAACTCCCAGCCTTGTTTCACCATCCACATGGCTAGGTGACAAAAACACTCATAGGCCCTAACAGCCCAATCCTGACGTTTCCTGTGAGACGAGACCAGGGAGGACAACCAACTGAGGACACAGAACTTCTAATAGCAACTTAGGATGGGACAGATCATGAGGATTATCTAGACATGTGTCATGCACAGAACTGCCCTTAAAGAGTATCAGAGGTGGAATTGAAGGAAATATAGTGCCTCCAAAAAgAGAAATACAAGAAGCCTGCCAAGACACATCATTCCTCGGATCACTAATCACATCTGAGCTTTTGACATTAATCCTTTGACACACTAATTGCATCTGAGCAATTCCCTCTCTGCCCCAGCACGCCTCGGAACATGTGAGACGGCCAAAGCAACTCCCTACGACATGCGCAAaagctctactgtgggatcagaccagatggtcTAGCCTTCGCTCTCCACTCACAttaatgagccttgggtgcccatgaccatGAAGCCAGTTCACCTGttttcttccttggaccacttttgAAATGCTCACAGTGATGAACTATCTAGACGATGCTAACAGTCTTCCAAAAACTATATGGGGCATCAACCGACTGTGGATTTAACAGTTCTGCGTGTTTGTCCAAGTAGTGCTGCCAGCGGACACATGCACGTATGCACTACTCAGAGGGAGCAGTGACTCATTCAAGAGCCTCACTGCTTGCAATACATGTGATGTGCTGCTCTTGCAAAGACTATGTTACAGCAAGGCAAAAGTGCAAATTGATCAAGCTAGTTGAACACACCTAAGtctaGCAGGTGCAGTAATGAAATGCGGCAAAGATGCACCCGAGGAGATCAAACAGCATGCTTTGGAGCAACTTAAGCATGCACCAGTGAGAAAGGGGGACACACACAATGAACTTTAAAGAACTTTTTCTATAATAAACGCGACATGGTCGTATGAGTTCTGAAGCGTATGCTCTAGGTGGATCGTTTATTTGTTAATTGTTATCCACTGCAGCTTGAGTTAAGTTTCACTTTTGTTTTCATGAgttttggacacacacacattgtctgtAGAGTTGCTTTGCAATTACAAATGAAAAGTACATTGAAATAAAAGTGAGTTTTAACTGAATGCAGCTTGAAACTGTTTATTTGGTCCAGAAGCAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119876 lncRNA upstream 71301 18261741 ~ 18277823 (+) False LOC117597602
XR_004578365.1 lncRNA upstream 71304 18261723 ~ 18277820 (+) True LOC117597602
TU119860 lncRNA upstream 143310 18205092 ~ 18205814 (+) True G101183
TU119517 lncRNA upstream 280555 17990402 ~ 18068569 (+) True G100846
TU119380 lncRNA upstream 856122 17490146 ~ 17493002 (+) False LOC113539654
TU120072 lncRNA downstream 178810 18536901 ~ 18537109 (+) True G101387
TU120073 lncRNA downstream 179495 18537586 ~ 18537809 (+) True G101388
XR_004578374.1 lncRNA downstream 187081 18545172 ~ 18545666 (+) True LOC117597609
TU120087 lncRNA downstream 190954 18549045 ~ 18549253 (+) True G101402
TU120096 lncRNA downstream 210907 18568998 ~ 18569765 (+) True G101411
XM_026932801.2 mRNA upstream 107515 18224061 ~ 18241609 (+) True cd81b
XM_026932718.2 mRNA upstream 160640 17761517 ~ 18188484 (+) False reln
XM_026932450.2 mRNA downstream 323426 18681517 ~ 18732814 (+) True idh2
XM_034304954.1 mRNA downstream 599337 18957428 ~ 19122497 (+) True sema4ba
XM_026913484.2 mRNA downstream 599337 18957428 ~ 19122497 (+) False sema4ba
XM_026914192.2 mRNA downstream 801895 19159986 ~ 19239977 (+) False zgc:162879
XM_026914191.2 mRNA downstream 801906 19159997 ~ 19239977 (+) True zgc:162879
XR_003403945.2 other upstream 856032 17489546 ~ 17493092 (+) False LOC113539654
XR_004578324.1 other upstream 905656 17400426 ~ 17443468 (+) False LOC117597546
TU118951 other upstream 1748057 16600257 ~ 16601067 (+) True G100345
TU118902 other upstream 1999337 16349457 ~ 16349787 (+) True G100306
XR_004578337.1 other upstream 3003156 15300482 ~ 15345968 (+) False carmil2
XR_004578373.1 other downstream 189834 18547925 ~ 18548289 (+) True LOC117597608
TU120088 other downstream 193355 18551446 ~ 18551724 (+) True G101403
TU120104 other downstream 240623 18598714 ~ 18599375 (+) True G101419
TU120119 other downstream 380252 18738343 ~ 18739998 (+) True G101434
TU120151 other downstream 435544 18793635 ~ 18794273 (+) True G101466

Expression Profile