RNA id: TU120088


Basic Information

Item Value
RNA id TU120088
length 279
RNA type TUCP
GC content 0.52
exon number 1
gene id G101403
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 18551446 ~ 18551724 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCGCACATGTGCAGAATCATGCATGCAGAGAGACCCTTGCTCGCATGACGATGACGCCCGAGCATTGACGGGTGTGTGGGTCACTGTAGAATTTAACAAAGCCTTGGAGATGGGCTACAGAGTGGCTAAAATCACGGAGGTATGGCACTTCGATAAAAGCAGCGACTCTGTGTTCACAGGGTACGTACACGCgtttttaaaaggaaagcaGGAAGCGTCCGGTTACCCGCCCGAAGCTAAGGATCCGGTCAGCAGGGAGAGGTACGTCAGTGAGTATCT

Function

GO: NA

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120087 lncRNA upstream 2193 18549045 ~ 18549253 (+) True G101402
XR_004578374.1 lncRNA upstream 5780 18545172 ~ 18545666 (+) True LOC117597609
TU120073 lncRNA upstream 13637 18537586 ~ 18537809 (+) True G101388
TU120072 lncRNA upstream 14337 18536901 ~ 18537109 (+) True G101387
XR_004578361.1 lncRNA upstream 193390 18349124 ~ 18358056 (+) False LOC117597601
TU120096 lncRNA downstream 17274 18568998 ~ 18569765 (+) True G101411
TU120102 lncRNA downstream 45767 18597491 ~ 18597706 (+) True G101417
TU120107 lncRNA downstream 50198 18601922 ~ 18602186 (+) True G101422
TU120121 lncRNA downstream 191356 18743080 ~ 18743291 (+) True G101436
TU120129 lncRNA downstream 201357 18753081 ~ 18753287 (+) True G101444
XM_026932801.2 mRNA upstream 309837 18224061 ~ 18241609 (+) True cd81b
XM_026932718.2 mRNA upstream 362962 17761517 ~ 18188484 (+) False reln
XM_026932450.2 mRNA downstream 129793 18681517 ~ 18732814 (+) True idh2
XM_034304954.1 mRNA downstream 405704 18957428 ~ 19122497 (+) True sema4ba
XM_026913484.2 mRNA downstream 405704 18957428 ~ 19122497 (+) False sema4ba
XM_026914192.2 mRNA downstream 608262 19159986 ~ 19239977 (+) False zgc:162879
XM_026914191.2 mRNA downstream 608273 19159997 ~ 19239977 (+) True zgc:162879
XR_004578373.1 other upstream 3157 18547925 ~ 18548289 (+) True LOC117597608
XR_003403945.2 other upstream 1058354 17489546 ~ 17493092 (+) False LOC113539654
XR_004578324.1 other upstream 1107978 17400426 ~ 17443468 (+) False LOC117597546
TU118951 other upstream 1950379 16600257 ~ 16601067 (+) True G100345
TU118902 other upstream 2201659 16349457 ~ 16349787 (+) True G100306
TU120104 other downstream 46990 18598714 ~ 18599375 (+) True G101419
TU120119 other downstream 186619 18738343 ~ 18739998 (+) True G101434
TU120151 other downstream 241911 18793635 ~ 18794273 (+) True G101466
XR_004578298.1 other downstream 405704 18957428 ~ 19121126 (+) False sema4ba
TU120293 other downstream 570888 19122612 ~ 19123877 (+) True G101602

Expression Profile