RNA id: TU120119


Basic Information

Item Value
RNA id TU120119
length 1656
RNA type TUCP
GC content 0.51
exon number 1
gene id G101434
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 18738343 ~ 18739998 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACcttgtgtgtgagcaggtgCTGCTTCAGGTGGTGAACTTGCACAAACTCTAAGCCACACTCAGAACAAATGTGGGGCCGCGTGTTCTGGTGCTTCATTAGGTGGTTCTGCAGCTGGCTCCTGTAGGCAAAGCTCTTGTGGCACTCACTACACTGAAAGGCGGCAGGCCCCTGGTGACTGACCTGGTGCCGCCTGAGGTGGGCATAGGTGGGGAATTCCATGGTGCATTGTGTGCAAATATGACACCGCCCATTCTCGTGCTTGGCCTCATGTGTGCGCAACTCGCTGGGGTAGGCGAACCCACGTCCGCAGAAGCGGCAGCTGTATGGTTTGATGTCACTATGCTGCAGCATATGGCGCTTGAGGTGGCTGGTCTGTGTGAAGGCCTTCTTGCACACAGTACACTTATGTGGCCTTGTGCCTTGGTGTGTAAGCAGATGTGTCTGCAGGTGGCTTGGTTGCTTGAACAGTTTTCCACAGTGCAAGCACTCATGTGGCTTGACCCCACTGTGACCCAGGATGTGTGTCACCAAATTGTACTTTGATGTGTATGACTTCTCACACATCCGGCACTTCCAGCGCTTCAGGCCTTCACCCACATCCACACAGTATGACTCGTCGATTTGCACATTGACGTCCAGACGGTCAATCTGCACACGGCGGGCTGCAGGATTCTCACCATCTGCCCATGTCGCCACCTGCCCACCATCATCATACTCTGCTGGTGTCAGATCTGGCTCAGCAGCTTCGTAGGTCAAAACACTAGATTCATAGTAGCCTCTCATTGCAGGACTCACTTCCTCGTCAGGAGTCTTAAGATTCAGTGCTCTTTGCTCATCTGGCCCCTCTTCTTTGGTGCCTCCTCCCTCAGGCTGGCTGGCTGCTTCTATTTCCTGTGTGTGATTAGCATCCTGTGAAGTTGTGTCTGAGTCTGGATCACTCTGCTGGTTGTTTGACTCCTTTGCATGCTCAGGGCTGCCTTTATTTTGCTCCTCCTTTAACGTCAGTCTGTGGGGGGCAAGGTCCAACACTTCAGACTCACTGTCATTGCAATGAACATTTGAGTAGTAACAGGGGCTTGAATATTCAGGCCGCTCTCCTTTCACCCAAGTCTGTACATCTGTGGATTTCTTAGCCATTTCTACTGCCTCATCGTTTTCACTTTGGTGCCTCTTGGCCTTTCCCCGAGGTCCTGAACGCTTTTTCTCCACCCCCAAAAGTCCATGTGGCCTCCTGTTTTCTCCATTGGGCTCAGGTAGGTAGTCTCCATTTGCGCCAATCAACTGGTCTGAATACTCATACTCCATTGCCTCTGGAGGTGGAGGGGGGCAGTCACGTGCCTCTCCAGTGTAAAAGCCATTAGGGGCGATGGTGGTGCCAAAGATTTCATTCTGAGATATGAGGCCCAGCACAGCAGCTTGAGCCAGGGACAGGACCACCACTGGATCAGTCTGTGTGCCGGTGTCCACCACATTTCCCATCACTTCACTGTAGCAGCGCACCAGAGGAACTGCCTGCTCCTCCTTCAAGACAGCAAATGACATACAGTCAGAAAACATATTATAGTAAATCCCATGGCTGTAAACTACAGTCATGGCAACAGTCACTACAGTAGAATACTAGCATTCAATACATTAGCATAAATGTGACATGaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120107 lncRNA upstream 136157 18601922 ~ 18602186 (+) True G101422
TU120102 lncRNA upstream 140637 18597491 ~ 18597706 (+) True G101417
TU120096 lncRNA upstream 168578 18568998 ~ 18569765 (+) True G101411
TU120087 lncRNA upstream 189090 18549045 ~ 18549253 (+) True G101402
XR_004578374.1 lncRNA upstream 192677 18545172 ~ 18545666 (+) True LOC117597609
TU120121 lncRNA downstream 3082 18743080 ~ 18743291 (+) True G101436
TU120129 lncRNA downstream 13083 18753081 ~ 18753287 (+) True G101444
XR_003403813.2 lncRNA downstream 62638 18802636 ~ 18816962 (+) True LOC113538061
TU120273 lncRNA downstream 129102 18869100 ~ 18869377 (+) True G101583
TU120276 lncRNA downstream 132244 18872242 ~ 18872458 (+) True G101586
XM_026932450.2 mRNA upstream 5529 18681517 ~ 18732814 (+) True idh2
XM_026932801.2 mRNA upstream 496734 18224061 ~ 18241609 (+) True cd81b
XM_026932718.2 mRNA upstream 549859 17761517 ~ 18188484 (+) False reln
XM_034304954.1 mRNA downstream 217430 18957428 ~ 19122497 (+) True sema4ba
XM_026913484.2 mRNA downstream 217430 18957428 ~ 19122497 (+) False sema4ba
XM_026914192.2 mRNA downstream 419988 19159986 ~ 19239977 (+) False zgc:162879
XM_026914191.2 mRNA downstream 419999 19159997 ~ 19239977 (+) True zgc:162879
XM_034305494.1 mRNA downstream 420423 19160421 ~ 19239977 (+) False zgc:162879
TU120104 other upstream 138968 18598714 ~ 18599375 (+) True G101419
TU120088 other upstream 186619 18551446 ~ 18551724 (+) True G101403
XR_004578373.1 other upstream 190054 18547925 ~ 18548289 (+) True LOC117597608
XR_003403945.2 other upstream 1245251 17489546 ~ 17493092 (+) False LOC113539654
XR_004578324.1 other upstream 1294875 17400426 ~ 17443468 (+) False LOC117597546
TU120151 other downstream 53637 18793635 ~ 18794273 (+) True G101466
XR_004578298.1 other downstream 217430 18957428 ~ 19121126 (+) False sema4ba
TU120293 other downstream 382614 19122612 ~ 19123877 (+) True G101602
XR_003402807.2 other downstream 2286029 21026027 ~ 21097841 (+) False LOC113526807
TU122021 other downstream 3047118 21787116 ~ 21794669 (+) False zbbx

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000013_00873450_00880028.mRNA True 2339 mRNA 0.52 8 CI01000013 873228 ~ 880042 (-)