Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU120529 |
| length | 708 |
| lncRNA type | intronic |
| GC content | 0.41 |
| exon number | 1 |
| gene id | G101824 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047600.1 |
| NCBI id | CM018546.1 |
| chromosome length | 31307711 |
| location | 19301254 ~ 19301961 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | description |
|---|---|
| ko04721 | Synaptic vesicle cycle |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU120518 | lncRNA | upstream | 29139 | 19271853 ~ 19272115 (+) | True | G101813 |
| TU120517 | lncRNA | upstream | 33709 | 19267319 ~ 19267545 (+) | True | G101812 |
| TU120513 | lncRNA | upstream | 47828 | 19252812 ~ 19253426 (+) | True | G101808 |
| TU120508 | lncRNA | upstream | 60492 | 19240116 ~ 19240762 (+) | True | G101803 |
| TU120294 | lncRNA | upstream | 176025 | 19124024 ~ 19125229 (+) | True | G101603 |
| TU120566 | lncRNA | downstream | 33620 | 19335581 ~ 19335782 (+) | True | G101855 |
| XR_004578313.1 | lncRNA | downstream | 34037 | 19335998 ~ 19339799 (+) | True | LOC117597536 |
| XR_004578314.1 | lncRNA | downstream | 34037 | 19335998 ~ 19339799 (+) | False | LOC117597536 |
| TU120567 | lncRNA | downstream | 34807 | 19336768 ~ 19336994 (+) | False | LOC117597536 |
| XR_004578348.1 | lncRNA | downstream | 60772 | 19362733 ~ 19386937 (+) | True | LOC117597585 |
| XM_026913320.2 | mRNA | upstream | 17551 | 19279150 ~ 19283703 (+) | True | psmd8 |
| XM_026914192.2 | mRNA | upstream | 61277 | 19159986 ~ 19239977 (+) | False | zgc:162879 |
| XM_026914191.2 | mRNA | upstream | 61277 | 19159997 ~ 19239977 (+) | True | zgc:162879 |
| XM_034305494.1 | mRNA | upstream | 61277 | 19160421 ~ 19239977 (+) | False | zgc:162879 |
| XM_034304954.1 | mRNA | upstream | 178757 | 18957428 ~ 19122497 (+) | True | sema4ba |
| XM_026913410.2 | mRNA | downstream | 52165 | 19354126 ~ 19360323 (+) | True | LOC113526414 |
| XM_026914425.2 | mRNA | downstream | 216642 | 19518603 ~ 19526473 (+) | False | lmo2 |
| XM_034305515.1 | mRNA | downstream | 218419 | 19520380 ~ 19526473 (+) | True | lmo2 |
| XM_034305188.1 | mRNA | downstream | 256059 | 19558020 ~ 19572869 (+) | True | bicra |
| XM_026913813.2 | mRNA | downstream | 271342 | 19573303 ~ 19581510 (+) | True | ehd2b |
| TU120293 | other | upstream | 177377 | 19122612 ~ 19123877 (+) | True | G101602 |
| XR_004578298.1 | other | upstream | 180128 | 18957428 ~ 19121126 (+) | False | sema4ba |
| TU120151 | other | upstream | 506981 | 18793635 ~ 18794273 (+) | True | G101466 |
| TU120119 | other | upstream | 561256 | 18738343 ~ 18739998 (+) | True | G101434 |
| TU120104 | other | upstream | 701879 | 18598714 ~ 18599375 (+) | True | G101419 |
| XR_003402807.2 | other | downstream | 1724066 | 21026027 ~ 21097841 (+) | False | LOC113526807 |
| TU122021 | other | downstream | 2485155 | 21787116 ~ 21794669 (+) | False | zbbx |
| TU122269 | other | downstream | 3650716 | 22952677 ~ 22981150 (+) | False | LOC113526422 |
| trnak-cuu_22 | other | downstream | 3861146 | 23163107 ~ 23163179 (+) | True | trnak-cuu_22 |
| XR_003402832.2 | other | downstream | 3970097 | 23272058 ~ 23272208 (+) | True | LOC113527010 |
