Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU120627 |
| length | 843 |
| lncRNA type | inter_gene |
| GC content | 0.40 |
| exon number | 2 |
| gene id | G101904 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047600.1 |
| NCBI id | CM018546.1 |
| chromosome length | 31307711 |
| location | 19486401 ~ 19487282 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004578348.1 | lncRNA | upstream | 99464 | 19362733 ~ 19386937 (+) | True | LOC117597585 |
| XR_004578313.1 | lncRNA | upstream | 146602 | 19335998 ~ 19339799 (+) | True | LOC117597536 |
| XR_004578314.1 | lncRNA | upstream | 146602 | 19335998 ~ 19339799 (+) | False | LOC117597536 |
| TU120567 | lncRNA | upstream | 149407 | 19336768 ~ 19336994 (+) | False | LOC117597536 |
| TU120566 | lncRNA | upstream | 150619 | 19335581 ~ 19335782 (+) | True | G101855 |
| TU120645 | lncRNA | downstream | 97903 | 19585185 ~ 19585435 (+) | True | G101919 |
| TU120731 | lncRNA | downstream | 219069 | 19706351 ~ 19707573 (+) | True | G101990 |
| TU120796 | lncRNA | downstream | 367235 | 19854517 ~ 19854743 (+) | True | G102050 |
| XR_003402828.1 | lncRNA | downstream | 405873 | 19893155 ~ 19897283 (+) | True | LOC113527003 |
| TU120841 | lncRNA | downstream | 436980 | 19924262 ~ 19928951 (+) | True | G102091 |
| XM_026913410.2 | mRNA | upstream | 126078 | 19354126 ~ 19360323 (+) | True | LOC113526414 |
| XM_026913387.2 | mRNA | upstream | 177600 | 19295492 ~ 19308801 (+) | True | spred3 |
| XM_026913388.2 | mRNA | upstream | 177600 | 19297565 ~ 19308801 (+) | False | spred3 |
| XM_026913320.2 | mRNA | upstream | 202698 | 19279150 ~ 19283703 (+) | True | psmd8 |
| XM_034305494.1 | mRNA | upstream | 246424 | 19160421 ~ 19239977 (+) | False | zgc:162879 |
| XM_026914425.2 | mRNA | downstream | 31321 | 19518603 ~ 19526473 (+) | False | lmo2 |
| XM_034305515.1 | mRNA | downstream | 33098 | 19520380 ~ 19526473 (+) | True | lmo2 |
| XM_034305188.1 | mRNA | downstream | 70738 | 19558020 ~ 19572869 (+) | True | bicra |
| XM_026913813.2 | mRNA | downstream | 86021 | 19573303 ~ 19581510 (+) | True | ehd2b |
| XM_026913814.2 | mRNA | downstream | 86022 | 19573304 ~ 19581509 (+) | False | ehd2b |
| TU120293 | other | upstream | 362524 | 19122612 ~ 19123877 (+) | True | G101602 |
| XR_004578298.1 | other | upstream | 365275 | 18957428 ~ 19121126 (+) | False | sema4ba |
| TU120151 | other | upstream | 692128 | 18793635 ~ 18794273 (+) | True | G101466 |
| TU120119 | other | upstream | 746403 | 18738343 ~ 18739998 (+) | True | G101434 |
| TU120104 | other | upstream | 887026 | 18598714 ~ 18599375 (+) | True | G101419 |
| XR_003402807.2 | other | downstream | 1538745 | 21026027 ~ 21097841 (+) | False | LOC113526807 |
| TU122021 | other | downstream | 2299834 | 21787116 ~ 21794669 (+) | False | zbbx |
| TU122269 | other | downstream | 3465395 | 22952677 ~ 22981150 (+) | False | LOC113526422 |
| trnak-cuu_22 | other | downstream | 3675825 | 23163107 ~ 23163179 (+) | True | trnak-cuu_22 |
| XR_003402832.2 | other | downstream | 3784776 | 23272058 ~ 23272208 (+) | True | LOC113527010 |
