RNA id: TU120668


Basic Information

Item Value
RNA id TU120668
length 2205
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G101939
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 19500337 ~ 19583769 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACAGTTTATTTGGTTTTATAATAATGGTATCCATTATAAAGCAATCAGTAAAGTGTTGTACAGTAGTCCACAACATAATTTGGTTTAAAATGCATGACATTAATAAGAAATTTACCAGAAACATTTCTAGTATGCAATGATTTAAGCAAATGTCACATTTTgatattcatgttttttaataGTGTTGAATTATAAGTCATAAAATTCTTTAGGATTATACCTCTAGGTAACTGTTATGCATATCCCAGATacccattttttaaatctcatgtTAGCATAATTGAGCTAgactttgattttatttatattttaaaagtaaagatgTACTGGTATTTAGCAACAGCGACAGAGACAGTAGGTGAAGATGCATAGCGGCTGTGATTCAGGAATGATAGCTCTGAAGAGAGGAAACAGTGCAGACCCCTAGACAGTTTTCTTAACTCAATGCATATTGGCATTCACACATTAAGGCTTGCCAGTCTCCCCAACGAGTTAAATTGTTTCTCACTTCTGAAGACTTTACTGATCAGGAAGATCGTCCCCATCATTATGTTAGGTAGATCTTTGCATATGAGGGCATAGGGCCATgaagaattattggcacccttcatgaaaatgagtgaaaattaatataaatttaaaagagTACGCAGTGTGATCTCAAACATAGAGAGacattgtatagttttattttatagttttacacacacacacacacacactatatgtgtgtgtgtgtgtgatatatatatatatatatatatatatatatatatatatatatatatataatgtatgcacatacatacagtggatataaaaagtttacacatcctgttaaaatgtcaggtttttgtgaagtaaaagaatgaaactaagataaatcatgtcataaaTCAtgtcttttcccacctttaatgtgacactGCAAGGcacacaaataaagtgaaaaacaatcagaaattttttaagggaaaaaggaaaaataaaaaacttgcaataacctagttgcataagtgtgcacacccctaaactaatactttgttgaagcaccttttgattttattacaccactcagtcttttggactgagtctatcagcatggcacatcttgacttggcaatattttcctaCTCTTTCTTGCagaaacattctagatccatcaaactgTAAGggaatctcctgtgcacagcccacaGGAcatccacagatttttagttggattcaggtctgggctctggctaggtaattcaaaaacattgatcttcttttgattaagccattcctttgttgatttggatgtatgctttgagtcactgtcatactgaaaggtgaaatttcttttcatcttcagcttactagcagacatctgaatgttttgcactaaaatcgtaGCTATTCATGATCCCCTctaccttgataaaagccccggTTCCGGCTGAACAAAAGcaaccccaaagcatgatgctgcacCATGGacatggtgttcttttggtgatgtgctttctttttttgcacaaaGCATAAcgtttggaattatggaattattataccttttggaatttgtctcatcagaccataatgcattttgccacatagtttggggtgatttacttgagcttggatgttttttgtgagaaaggatttctgtctagccaccctacctaTAGCCCAGACATgcgaagaatacgagagattgttgtcacatgcagagagtaatcagtacttgtcagatattcctgcatctcctttaatgttgcagtaggcctcttggcagcctccctggtaagtttttgtcttgtctttttatcaattttggagggacgtcctgttcttggtgatgtcactgtggagctccattttttatatttgttgatGATAGCCTttacggtgttccatggtatatctaatgttttggaaatttgtttatacccctctcctgattgatacctttcaacaagtgggataccatgcatgctttgtaagctctttgcggaccatggcttcaggagtcggatgaaaccaagaagatgtgaagaaaatcagctggtctttatttggggttatcagaataatttcattgatgacagctgtatgatgattacttttgaacatgagattgaatgtgagtgtttcattctgaacacagcagcatctccaattataaaagggtgtgcacacttatgcaaccagGAGATTGCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120665 lncRNA downstream 9082 19490529 ~ 19491255 (-) True G101938
TU120659 lncRNA downstream 105033 19395071 ~ 19395304 (-) True G101932
TU120585 lncRNA downstream 136528 19362572 ~ 19363809 (-) True LOC113526920
XR_003402820.2 lncRNA downstream 136537 19362688 ~ 19363800 (-) False LOC113526920
TU120579 lncRNA downstream 139329 19360792 ~ 19361008 (-) True G101865
TU120685 lncRNA upstream 1871 19585640 ~ 19585839 (-) True G101955
TU120832 lncRNA upstream 270761 19854530 ~ 19854763 (-) True G102082
TU120887 lncRNA upstream 359942 19943711 ~ 19967777 (-) True G102129
TU120906 lncRNA upstream 415194 19998963 ~ 19999181 (-) True G102146
TU120907 lncRNA upstream 416332 20000101 ~ 20000323 (-) True G102147
XM_026913684.2 mRNA downstream 3344 19407050 ~ 19496993 (-) True pik3c2a
XM_026913687.2 mRNA downstream 3347 19407050 ~ 19496990 (-) False pik3c2a
XM_026913714.2 mRNA downstream 166907 19309888 ~ 19333430 (-) True dhx34
XM_034305474.1 mRNA downstream 758613 18734427 ~ 18741724 (-) False znf710a
XM_026913612.2 mRNA upstream 467563 20051332 ~ 20054436 (-) True LOC113526513
XM_026913745.2 mRNA upstream 631373 20215142 ~ 20292323 (-) True nectin1b
XM_026913303.2 mRNA upstream 778561 20362330 ~ 20377332 (-) True si:ch211-132b12.7
XM_026913555.2 mRNA upstream 799041 20382810 ~ 20389633 (-) True ccnp
XM_026913651.2 mRNA upstream 812097 20395866 ~ 20416574 (-) True akt2
XR_003402833.1 other downstream 149394 19350762 ~ 19350943 (-) True LOC113527011
TU119855 other downstream 1303531 18187447 ~ 18196806 (-) True G101178
XR_004578368.1 other downstream 1413366 18086655 ~ 18086971 (-) True LOC117597604
TU118530 other downstream 4145700 15347166 ~ 15354637 (-) True tmem170a
XR_003403523.2 other downstream 5153329 14335936 ~ 14347008 (-) False dennd11
XR_003402829.1 other upstream 396300 19980069 ~ 19980259 (-) True LOC113527007
TU121422 other upstream 1369833 20953602 ~ 20966910 (-) True G102566
XR_004578325.1 other upstream 1411572 20995341 ~ 21013100 (-) False sertad3
XR_004578321.1 other upstream 2650934 22234703 ~ 22306769 (-) False si
XR_004578330.1 other upstream 4007176 23590945 ~ 23610448 (-) True mmp23bb

Expression Profile