RNA id: TU120840


Basic Information

Item Value
RNA id TU120840
length 1980
lncRNA type sense_over
GC content 0.40
exon number 2
gene id cdon
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 19920049 ~ 19969787 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agaaaaactctttagatggcttatttatttttgtattagtAAAATATTCTTTCATATGAATGTAtctgttttaagaaaaaaaaaagttagtcttttatattatttatgcttttttgGATGAAAtactttctatttttttgtcatttttagtttTCCCCACATTCCACACAGTGTGGAGTTCAGCCATTGTATGTGTAAAgttgtgtaataatataaagaaGATATGGTAGAGAGTGTGTCCTgcttctcctgtgtgtgtgtgtgtgtgtttcatttcagtCATCGTGGAGGAACGAGGTAAGTTTCTTCACATTCGTAgctgaagaAAAGCATATTTTCACCAACTCGCAGAAGTGAAGTCCAGATGTGGGGGAAGAGGAGCTAATCCCAGACCAGCACAGCAGGACATCATCTATCAGACCTTCTTTGTTTTTAAGCAGTTTGCCCGCCTCTTACTAGTCAGCAACAACCATGTTGATTGATCACTTCTAAGTCTTCCTGAAtgctttatttacacattagCACCTCCTCTCAGTTCTCTCTAGTCCTTTGTTCTTCCTAAACCAATGGATGACCTGGATGACCTTTTGACCTTTTGGGCCCATTGTGGCAAACTAACTACTGTTTTGTGTGGTTGAAGATGCTCTCTCCTGTATGGTTAGAAACTCCTCAGAGTATATACAGGTATTTAAGTGTCTATAGAGACAGTTGGCGGTGTGTTCATTATAAGTTTATTGCACATGGTTGCTCTCGAACCTCTGATCATAAACCAGAACTATTATGTGTAAGGCAAggcatttttttattctatggTCTTTTTTTGGGGAAACTCTGGAACATTCATTGTGAAAATGTACGCTAATTCACTTCCTTTCCTTTAATGAAGCGCACACTGAGCTGACATTAGAGCTGAACGGCCTTAAGATCAGATTGAACACTGGTCAACAATAGTACAGAGAGCTAGAGTGTTGTTGGTGTGAAAGTTAGAAGGCTACAGTGTGTAATAATTAGCATCTGAGCTCAGTGGAATTTGAGCTGTGTTTCTGCGAAACTCTATCTGATGGGCTCATACAGAGCTTTGGTAATGTTGGCTTCAGGGCCACATAATGGAGCGTAGTACCTATCTGCATGCGTGAGTGCCAATGGCCAGCTGCTTTACAGTCTTCCAGAGCCAAGCATTTCTCTCCTGTGTCTCCTGCACTTTAACTTCCTCTGAAAATTAGGACTCCTTAACCACCACTGATGATCACTTCCTTCTACTATATTTGGTTGGAGAAAGAAAGCCTGAGGTGTAGTTAGCTTGCATCTGCCACTTTGTGGTCATGTATAATTCATGCCAAGGCACACAGAGGTGGTTTCATGCTTTTTCTGTTGCAAGATTCTGGCTTGAGGTTAAACCGTCTGGACTGTAGAGTCACTCAGGCTTCTGTTGAGGAACCGGAGCCAGGATCCAAACAGGCGGCCAGATCATAGCATTACTTCAAAGCTTTTTTCACATAAACTCCCCTCTTCTCTAGTTTACATTATAACATCTGAAAACAAATGTGCTTTTACAGATGTGTTTATACGTAAGCTGAATGCTTGTGTCATTATCTACCCCTTGTATACAGATCTAATCAACTAATGAATCATAAACTAATCATTTTATTCTTATGGTGAGTGATCATTATTCGCTTAGGGTTAGAGCTGTGACTGCTGAAGGAAAGGAATCAGTAGCTAGCTCTGGGGCAAAGCATCTCTTCTCGCTTGAGATTAATGTTTGTGGAAATCGTCcatgagaaaataaacacacgaTGCTAAACAATGGACAGTAAGGAAGGAAGGCCAGAGAGGAATTAGGCATTTGTCGTAAAGATGGGATGCAAACAGGATGCTCAAGTTGATGGTTAGGATGAATTATATGCAGGGGTGACTCGTATCAatgggctagcagggctaagtcttttaaaaaaaaacaagcagtgtAAGGTTTCGGTTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120843 lncRNA upstream 31357 19936163 ~ 19936424 (+) True G102093
TU120841 lncRNA upstream 38830 19924262 ~ 19928951 (+) True G102091
XR_003402828.1 lncRNA upstream 70498 19893155 ~ 19897283 (+) True LOC113527003
TU120796 lncRNA upstream 113038 19854517 ~ 19854743 (+) True G102050
TU120731 lncRNA upstream 260208 19706351 ~ 19707573 (+) True G101990
TU120839 lncRNA downstream 1906 19971693 ~ 19972119 (+) True G102089
TU120849 lncRNA downstream 13160 19982947 ~ 19983147 (+) True G102098
TU120857 lncRNA downstream 28084 19997871 ~ 19998083 (+) True G102106
TU120859 lncRNA downstream 29605 19999392 ~ 19999674 (+) True G102108
TU120855 lncRNA downstream 82523 20052310 ~ 20052682 (+) False bcl9l
XM_026914298.2 mRNA upstream 121944 19835533 ~ 19845837 (+) True si:ch211-151h10.2
XM_026913948.2 mRNA upstream 132352 19801828 ~ 19835429 (+) True prdm10
XM_026913610.2 mRNA downstream 34569 20004356 ~ 20053142 (+) False bcl9l
XM_026913607.2 mRNA downstream 34571 20004358 ~ 20053142 (+) False bcl9l
XM_026913606.2 mRNA downstream 34571 20004358 ~ 20053142 (+) False bcl9l
XM_026913611.2 mRNA downstream 34571 20004358 ~ 20053142 (+) False bcl9l
XM_026913609.2 mRNA downstream 34571 20004358 ~ 20053142 (+) False bcl9l
TU120293 other upstream 843904 19122612 ~ 19123877 (+) True G101602
XR_004578298.1 other upstream 846655 18957428 ~ 19121126 (+) False sema4ba
TU120151 other upstream 1173508 18793635 ~ 18794273 (+) True G101466
TU120119 other upstream 1227783 18738343 ~ 18739998 (+) True G101434
TU120104 other upstream 1368406 18598714 ~ 18599375 (+) True G101419
XR_003402807.2 other downstream 1056240 21026027 ~ 21097841 (+) False LOC113526807
TU122021 other downstream 1817329 21787116 ~ 21794669 (+) False zbbx
TU122269 other downstream 2982890 22952677 ~ 22981150 (+) False LOC113526422
trnak-cuu_22 other downstream 3193320 23163107 ~ 23163179 (+) True trnak-cuu_22
XR_003402832.2 other downstream 3302271 23272058 ~ 23272208 (+) True LOC113527010

Expression Profile