RNA id: XM_034305406.1


Basic Information

Item Value
RNA id XM_034305406.1
length 4020
RNA type mRNA
GC content 0.50
exon number 19
gene id cdon
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 19920049 ~ 19969787 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTGAGAGTAGAAAAGTGTGCATGTGGAGGGTGTGTGCGTGCGAGACCCCTGGTTAGCGTCCTGAGGTGAAGCAGCGTCATGGAAGACAGGGGCCTAAGAGGCCTGAAGGTTCTGTCCATCGTGCTGTGCATTTTCCAAACTCTTCTCCTCAACTGCCCTtTTGCATTATCTCTCTTATTCCACACACAACCTGCCTCTGTGGTTCAGAAGCAAGGCAGCGCTGTTCATCTGCACTGTTTGGTGCATCCTGCCTCAGCCACAGTCACCTGGCTGTTCCAGGGTCGTGCCCTGGAGCCGGAGTCGCTACCCGGGGTGGAGGTCCACCCTGACAGAATCTCCCTGCCCTCTCTCCAGCCCCAAAACACTGGCATTTACCAGTGTGTGGCACACTCAGACGCAGGTTCCATCACCAGCCAATGGGCACGGGTAACCATCGCAGAAATTACGGAGTTTGGACAGACCCATCGGCGGTCTTTAGTAGAAAAAGAAGGGAACACTGCTGTCATTGAGTGCCAGCTACCTCGGAGTAATCCCCCAGCTTTGCCACGTTACAGAATACGGGGAAAATGGCTAGAGGAGTCTACAGatgaATATTTAATCCTTCCTTCTGGGAACCTTCACATAGTCTCTGTTTCTCCAGAGCATCAGGGCATGTATAAATGTGGCGCTTATAATCCTGTTACCAGAGAGGTCAAGGTCGAGCCCTATGGCACTAAGCTCTTAGTGAAAAATTCAGATGGTCCTTCCCCTGTGGGGATAGTATATCCAGTCAACTCTGTCAACCTGACAGTGGAACAGTCCATGTCCTTGGTTCTGGAATGTGTAGTATCAGGAAATCCCTCTCCTGTTGTTAAATGGTTGAAGGATGGCCAAGAGCTGCCTCTTGCTCCCAGACtgagacttctgcacagtaatCTGGTGCTGACTGATGTTCAGATAAGTGACGGAGGAAATTACACTTGCTTTGTTCAAGTAGAGGAAGGTGCTGTGGCCAGTGCCAACTATATTGTGGAAGTGCTTGGGCCTCCTGTTATAATGAGAGGTCTGAGTGACCAGACTGTGAAATCTGGCTCATTTGTGCAATTCACTTGTGCCACCTCGGGAAATCCTGTTCCTAACATCACCTGGCTCTTCAACTCTTCCCCAGTTTTATCCTCACCACGACTCCAGATATCGAACTCCACCCTGCGTATTTTCTCACTCACTGCTCGGGACCAGGGCATGTACCAGTGTGTGCTAGACAACAGGATTGGCTCTGCACAGTCAGCTGCCAGACTTAGTATTCAGCTGGAACCTCAGTCCAGTTCCACCACTGCTGCTACTACGGACACACAACCAAGTGTCCATCCAGTTCAGAGTGATGAAGGAGAGGGGCTGTTCCTGGCTTCAGAGGATGGCCTTGGTGATGCCAAAGGTTCATTCACAGAGAGGAGCAGCGACAAGCCCACTCCAGAGGCTCCAATCATTATCAGTCcgccacaaacacacagacccACTGCATATGATCTAGAGTGGCGACCAGGACGAGACTGGGGCAGACCAATCAACGCCTACTTTGTTAAATATCGCAAGGTGGATGAGATGGGCAACGTGGTGGGCAGCTGGCACACAGTACGCGTTCCAGGTAGTGAAAGGAGCCTCCCCCTGTCGGACCTGGAGCCTTCCAGCCTGTATGAGGTGCTGATGGTAGCACGCAGCAGTGCTGGTGAAGGCCAACCCGCCATGCTTACCTTTCGAACCGGAAAGGAGAAGAGCTCCTCCTCCAATAAGAATCCCTCCAAGGCCCCGTTTGTGTCTTTGCCTGAGAAAGCCCCCGAAGACAAAGTCATCAATACGCACTATGGAGTGGTCATCCATGACAGAGTTCCTGAGGCCCCAGATCGGCCAACCATCTCCATGGCATCAGAGAATTCGGTTTACGTCACATGGATCCCGCGGGCCAATGGTGGATCTCCAATCACAGCTTTCCGCGTAGAGTACAGGAAGGGCCGTAATGCGGATTGGATCATAGCTGACGACAACATCTCACCTCTCAAGCTGTCCGTGGAAGTGCGCAACTTGGAAGCAGGTTCCACGTACCGTTTCCGTGTCATCGCCATGAACAACTATGGCGAGAGTCCCCACAGCGCCACCTCCAGGCCATACCAGATAGCGATGACGAATTCACCTGTGTCCAACCGACCCGTGGCTGGCCCTCACATCTCTTCTACTGATGCTGTCAGCGACACGCAGATCATGGTGCGATGGACTTACACCACTTCCAGTAACAACAACACCCCCATCCAAGGCTTCTACATCTACTATCGCCCTACAGACAGTGACAATGACGGTGATTATAAGAGAGATGTGATAGAAGGTATCAAGCGCTGGCACATGATTGGTCAGCTCCAACCCGAGACATCCTATGACATCAAGATGCAGTGCTACAATGACGCTGGAGAAAGCGATTACAGTAACGTGATGATATGTGAAACTAAagCGCGTCAGCCTCCAGGTGTTCCCAGTCAGCGGCCCATCACTCCGCCAGCCGTGTACCCACCCAGTTCAAATTCTTCAGCAGGTGGCGTCTTGTACCTGATCGTGGGCTGCATTCTGGGTGTCATGGTGCTCATCCtgctcatcttcatcatcatgtgCCTGTGGAGAAACCGCCAGCAGCACAGCATGCACAAGTACAACCCTCCTGGTTACCTGTACCAGCCTGCTGAGATGAACGGTCACATTATGGAGTACACAACACTACCTGGCTCCAGCCAGCTCAACGGCAACATGCATGGTAGCTACGGGAACAGTGGGTCCGTAATGCCCCAGGGTTGCCATCACCTCCACCATAAACTCCCCAATGGTCTGACACTACTAAATGGCTCAGGCCCTCTCTACAGTCTGGGACATTCCCACACCCATGACACATCTCTACCCCACAGCACCGTGGACTTTGAGCATACACACCCTCGCCATATGCACAGTCGAGGAAGCATGTACACATCTGTACCCCAGACGGACTCTTCTGACTGCATGAACTGCCAGAACTTCTGTAACAACAACAGGTGTTACACGAAAGCCAATGGCAATTTCTCAGGTGGCCTAAAGCACCACCTGGTACCTTGCCAGCTTGATGGGCTCGAGATGGTGCCTCTGAACCATGGCTCGCTCCTGTGCCATGGTAATGACAGCCCGGCACCCCTGGGGATTTGCGAGAGGGCGGATATGATCAGAGAGCAGATGCAGGTCAACTCAGACTCAACGTCATCCCAGAATTCTGAGTGTGGAACCGGACAAGAAGTTCCAGGCACCAACTATAGCAGAGATTCAGTACAGTGTGTGAACTCAGACGAGCCGCTGATGTGTTTGGAGAGGCTGGACCTATCTGATTTGGACTGTAAAGAGAAAACCGCCTGGATCTCCACTACAAGTCTAAATGGAGACCTTATCCACCCTACAGCACAGGAGATATgaactcacaaacacacagcagcaatccacacacacacacacacacacacacacaaaacacacacacacaaatatgcatttttcacatatatacacatccCAAACATGCATACCTACGCAAGAACAGCAGACAATGAAGAAACGTGAAAATATAttcagagaaaaggaaagagccAGTGCTGAAATGCTCGGACTTTACCTGAAGGACACTATATTGACCTACTGTGCTGGATGTGAATGAGGGAGGAATGGGGGGGGAGTGTGTAGGCACAGAAGAATGGATTTTGGAAGTGCTATTTCTCTTTTCCATTTGTGcgaaggacaaaaaaaaaaaaagaaaaactctttagatggcttatttatttttgtattagtAAAATATTCTTTCATATGAATGTAtctgttttaagaaaaaaaaaagttagtcttttatattatttatgcttttttgGATGAAAtactttctatttttttgtcatttttagtttTCCCCACATTCCACACAGTGTGGAGTTCAGCCATTGTATGTGTAAAgttgtgtaataatataaagaaGATATGGTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003402828.1 lncRNA upstream 23582 19893155 ~ 19897283 (+) True LOC113527003
TU120796 lncRNA upstream 66122 19854517 ~ 19854743 (+) True G102050
TU120731 lncRNA upstream 213292 19706351 ~ 19707573 (+) True G101990
TU120645 lncRNA upstream 335430 19585185 ~ 19585435 (+) True G101919
TU120627 lncRNA upstream 433583 19486401 ~ 19487282 (+) True G101904
TU120839 lncRNA downstream 3682 19971693 ~ 19972119 (+) True G102089
TU120849 lncRNA downstream 14936 19982947 ~ 19983147 (+) True G102098
TU120857 lncRNA downstream 29860 19997871 ~ 19998083 (+) True G102106
TU120859 lncRNA downstream 31381 19999392 ~ 19999674 (+) True G102108
TU120855 lncRNA downstream 84299 20052310 ~ 20052682 (+) False bcl9l
XM_026914298.2 mRNA upstream 75028 19835533 ~ 19845837 (+) True si:ch211-151h10.2
XM_026913948.2 mRNA upstream 85436 19801828 ~ 19835429 (+) True prdm10
XM_026913610.2 mRNA downstream 36345 20004356 ~ 20053142 (+) False bcl9l
XM_026913607.2 mRNA downstream 36347 20004358 ~ 20053142 (+) False bcl9l
XM_026913606.2 mRNA downstream 36347 20004358 ~ 20053142 (+) False bcl9l
XM_026913611.2 mRNA downstream 36347 20004358 ~ 20053142 (+) False bcl9l
XM_026913609.2 mRNA downstream 36347 20004358 ~ 20053142 (+) False bcl9l
TU120293 other upstream 796988 19122612 ~ 19123877 (+) True G101602
XR_004578298.1 other upstream 799739 18957428 ~ 19121126 (+) False sema4ba
TU120151 other upstream 1126592 18793635 ~ 18794273 (+) True G101466
TU120119 other upstream 1180867 18738343 ~ 18739998 (+) True G101434
TU120104 other upstream 1321490 18598714 ~ 18599375 (+) True G101419
XR_003402807.2 other downstream 1058016 21026027 ~ 21097841 (+) False LOC113526807
TU122021 other downstream 1819105 21787116 ~ 21794669 (+) False zbbx
TU122269 other downstream 2984666 22952677 ~ 22981150 (+) False LOC113526422
trnak-cuu_22 other downstream 3195096 23163107 ~ 23163179 (+) True trnak-cuu_22
XR_003402832.2 other downstream 3304047 23272058 ~ 23272208 (+) True LOC113527010

Expression Profile