RNA id: TU120855



Basic Information


Item Value
RNA id TU120855
length 373
lncRNA type sense_over
GC content 0.54
exon number 1
gene id bcl9l
representative False

Chromosome Information


Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 20004356 ~ 20053142 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


GGGCCGACGGGTCTGGAGGCTGGAGACAACATGAACAATGGCGAGGTAGCGATCAAAACCAATGCCTGCAAGGAGAAGACTCCCACACACCAGATTCAGGCGGTGTAACAGGCCTACGAGCTTGCACAGGAAGTTCCCAAAGATCCAGCCTGTCAGCACTTGGATTACTGCAAAAGGTAAGGTAAGGAGCAGGAGCAGATCAGCCAGGGCCAGATGCAGCAGATAGATGTCAGTCATGCGTAGGTGAGCACGACGCTGCAGCAAGACCAGCAGCAGGAGGCCATTTCCTGAGAGGCCCAGCAGAAACACCATGCTGAAGACTAGTGGCTGGAGCAGAGTATAGTACAGGAACAGGGGGTCTTTTTCAGTGTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU120859 lncRNA upstream 52636 19999392 ~ 19999674 (+) True G102108
TU120857 lncRNA upstream 54227 19997871 ~ 19998083 (+) True G102106
TU120849 lncRNA upstream 69163 19982947 ~ 19983147 (+) True G102098
TU120839 lncRNA upstream 80191 19971693 ~ 19972119 (+) True G102089
TU120840 lncRNA upstream 82523 19967781 ~ 19969787 (+) False cdon
TU120875 lncRNA downstream 2350 20055032 ~ 20055232 (+) True G102124
TU120935 lncRNA downstream 39717 20092399 ~ 20092789 (+) False ddx6
TU121062 lncRNA downstream 343185 20395867 ~ 20397389 (+) True G102285
TU121063 lncRNA downstream 343185 20395867 ~ 20399958 (+) False G102285
TU121065 lncRNA downstream 369339 20422021 ~ 20424905 (+) False G102286
XM_026914000.2 mRNA upstream 84299 19920049 ~ 19968011 (+) True cdon
XM_026914001.2 mRNA upstream 84299 19920620 ~ 19968011 (+) False cdon
XM_034305406.1 mRNA upstream 84299 19920865 ~ 19968011 (+) False cdon
XM_026914298.2 mRNA upstream 206473 19835533 ~ 19845837 (+) True si:ch211-151h10.2
XM_026913949.2 mRNA upstream 217786 19801828 ~ 19834524 (+) False prdm10
XM_026914147.2 mRNA downstream 24283 20076965 ~ 20092932 (+) True ddx6
XM_026914098.2 mRNA downstream 45013 20097695 ~ 20115417 (+) True treh
XM_026914100.2 mRNA downstream 45013 20097695 ~ 20115417 (+) False treh
XM_026914235.2 mRNA downstream 305531 20358213 ~ 20360195 (+) True ttc36
XM_026914159.2 mRNA downstream 520599 20573281 ~ 20629325 (+) False trip12
TU120293 other upstream 928433 19122612 ~ 19123877 (+) True G101602
XR_004578298.1 other upstream 931184 18957428 ~ 19121126 (+) False sema4ba
TU120151 other upstream 1258037 18793635 ~ 18794273 (+) True G101466
TU120119 other upstream 1312312 18738343 ~ 18739998 (+) True G101434
TU120104 other upstream 1452935 18598714 ~ 18599375 (+) True G101419
XR_003402807.2 other downstream 973345 21026027 ~ 21097841 (+) False LOC113526807
TU122021 other downstream 1734434 21787116 ~ 21794669 (+) False zbbx
TU122269 other downstream 2899995 22952677 ~ 22981150 (+) False LOC113526422
trnak-cuu_22 other downstream 3110425 23163107 ~ 23163179 (+) True trnak-cuu_22
XR_003402832.2 other downstream 3219376 23272058 ~ 23272208 (+) True LOC113527010

Expression Profile