RNA id: XM_026914147.2


Basic Information

Item Value
RNA id XM_026914147.2
length 5321
RNA type mRNA
GC content 0.42
exon number 14
gene id ddx6
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 20076965 ~ 20092932 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGGAGGGTTTAAAGATGACTGGAAGCCATCTTGGCCGTTCGCTGTAGAGCCCCAAAATATCACACAGGCCTAACTCTTAACACTTCGGAAACAATAAATAGCGAGTGGCGTGGAATTTCAGCTCTATTTGgTTGAAAACTTTGAGTCATCGATTATGAAAATTGAGAGAAAGAAGAGTGGatgcaaagaaataaaataactagATGTCTGGCTGCTTAGCCTCTCTCTGGTTTGTGAGACTATAATTTTGAGAAACTGGGATATTTCTCAAGAGACTTTCAGTTAATTTCCTACTTTCAGAATTTGTGGATAATTACTTGGGTGATTTTTTGCATTGAGATGTTTTACAAAAGACATATATTCTTGAGGAACAAGTTGTGAAATATAACTGCTTGAACTTTGGTTTGGACTGTGGTAAGGACATCTTAAATTCAGCGAAAGCTTATACGTCCCAGTTTCTTCAGTcacttttttttggaagaaagatTTAAACAGACATGAGTACAGCCAGAACAGAGAACCCAGTTATTCTGGGCTTGACGAACCAAAATGGCCAGAAGAGAGGCTCTGCGAAGCCGACGGGGGGacctggtggtggtggtggtggcggGGGACCTCAGACAACACAGCCCGCCCAGATTAAAGCTTCCAGCACAGTCAACAATGGCAACTCCCTGCCTGTGCCCACAGCAAACACGGTCATCAAACCTGGGGATGACTGGAAAAAGAATTTAAAGCTTCCCCCAAAGGACATGCGCATGAAAACTTCTGATGTAACTGCTACCAAAGGGAATGAATTTGAAGATTACTGCCTGAAGCGGGAGTTGTTAATGGGCATATTTGAAATGGGCTGGGAAAAACCATCACCTATCCAGGAGGAGAGCATTCCCATTGCTTTGTCTGGCAGGGACATTCTGGCTAGAGCCAAGAATGGCACAGGAAAGAGTGGTGCCTACCTCATTCCCTTACTTGAACGTATTGATCTGAAGAAAGACTGCATACAAGCACTGGTCATTGTCCCCACCAGGGAACTGGCTCTGCAGGTGAGCCAGATCTGCATCCAGGTCAGCAAACACATGGGTGGGGTTAAGGTCATGGCAACCACAGGTGGAACCAACCTCCGTGATGATATTATGCGGCTTGATGAGACCGTGCACGTTGTTATCGCCACTCCTGGAAGAGTGTTGGATCTCATCAAAAAAGGAGTAGCCAAAGTTGGCCAGGTGCAGATGATCGTGTTGGACGAAGCAGACAAGCTCCTGTCTCAGGACTTCGTGCAGATGATGGAGGAAATTCTGAGCTTCTTGCCCAAGCAAAGGCAAATTCTGCTGTATTCTGCAACTTTCCCACTAAGTGTACAAAAGTTCATGAATGCCCATCTGCAGAAGCCTTATGAGATAAACCTTATGGAGGAGCTGACCCTGAAGGGTGTGACCCAATATTACGCATACGTGACTGAAAGGCAGAAAGTCCATTGCCTTAATACTCTTTTCTCTAGGCTCCAGATCAATCAGTCTATAATCTTCTGCAACTCGTCCCAGCGAGTGGAACTCCTGGCCAAGAAAATCTCCCAGCTGGGTTATTCCTGTTTCTACATTCATGCCAAGATGAGACAGGAACACAGGAACCGTGTGTTCCATGATTTCAGAAATGGTTTGTGCCGAAATCTTGTCTGCACAGatttgtTTACGAGAGGGATTGACATTCAGGCTGTGAATGTGGTGATCAACTTTGATTTTCCCAAACTTGGGGAGACGTATCTTCATCGTATTGGCAGATCTGGTCGTTTTGGGCACCTGGGTCTGGCTATTAACCTGATCACCTATGATGACCGCTTTAACCTGAAAGGCATTGAAGAGCAGCTGGGCACAGAGATCAAGCCCATTCCTAGCAGCATCGATAAGAGCCTGTATGTGGCGGAGTATCACAGTGAGAGCGCTGAGGAGGTCAAACTGTGAGCAAGAGAGATCACCAAGCCCCCAGCCACTACCCCCttactctttctttttatttctctacaTTTTTGTcccttctctttattttttttgtcttcctttTTTGTGCCACCATGAGGAATTTCTttgaaacaggacaataacgGAGGAAAAATGTCATGGCCCTTAAAAGGACTGCTGCGTCATTTAACATTCTGAAGATTCTAAAGCACTTGAGAGAGAAGGGTAGAAGAGGATGATGGAAGCTAATTATCCTATTTATTAATTGAGAAAATGCGACTACTTTTCACCTACCTGAACATCACCCACTGGCCCTCAGACCCAGCTTTTTCCATCCAGCACctctttattttcatgttatttggTTATTTGTATGAAGTGCCTTAACAAGCAGTCGAACTTTGTTCAAAGTAATAATGTTTTTCCCAGATCTTGCCCTTCTCATGTCACCTGCTGTTAccctttatttacttttaatttctaCTTGGTTTTCAGAAGCAATCATTACACATCCCCTGGTgctttttggaatttttttttttttttttattgtttgttttggaggAATAGACCAAGTAGATTTTGTGGAGGGAAAGGGCTGCCTCCATAATGTATGGAAGGTGTGCAAAAGCGGCCTTTCCTCTCAATCTGGGTATTGATTATGATTTTGGTGATGAAAGCGGGACTTGATGTTTTCTCAGCATTTTTCATGTACCCCTAAAATGGCTCAAGTGGCGTTCTCATTTGTTGTCATGGAACATGTGCTTCTTAGAGACTGactctctccctttttcttcAGTGCTCCAAAACGACAAGAGACTTGCTCAGAGACTCCAGCCAGCCTTTTCCTCCTGCTGTGATTCCTCTGCCTGATCAATGTGGAAATATTggaactttttttccccccctcctTCCCATTATTGTTCCATTGCAGTTCTCATTCGTTTTGGGTGGCTACACATTGTCGTAGATGTGCCATTGAAATCAATTTTGGCACAATGTAAACTTTGTAaatactttcatttcatttttaatggatCTTTTATAAAACAAGCTAAAAGGCTGGAGGGTTATGTAAGAAACATCAAAGATGCAGGATTCTGTCAGCACTGGATGGCATCTCCTTCCTTTTCCTGCTTCTGTCAAGCTGTCACCTTTTcggtgatttaaaaaaaggcttaaaACTTGAAGTGATGTCAGatcttttgtttataaaaaattggactccagatttatttatttttttgaagcaTTGGCCAGGTTTATTTACTGTGCACAAAATGTCCCGAACAGTTCAAAGCATTTTTAGTTAAACCTCTATCAGTGGTGTTATGGGCACCTCATCTTGATGTTAGTAGCTTAACTAGATTATCTGCTCTCCAGCCTTTGCTTGTTCCACTGACTTACAAAGCACTCGTTGGGTCCCTGTTCATGGTGACTCGCATATGAGAGAAAATATTTGCATCATGTAGTAATGCTTGTTGCTGCAGTGCAGCTTTAATTGGCAATCTATGGGGTGGGTGGGGTCAGCTTGCTAATGGTATATGATACTGTTACACTGATCATTGTTCACTGCCATTGGCACTGGTACATGATGCTTTcagatggagaaaaaagatGTGCTTTGGGGGGGGGGGAGTCTGCCATTCAGAAGTCAGAACAAATGCAGACAGTCCAAAAAATGGGAATTGACAAATGTAGCTCTCAAGGAAACAGGTcttgtgttctgtttttttctgttttttttttttttttaatccaattttCTCAAAAACTACAGagctaaaaaaagaaacctttacCTATCTGTCCTGCACTAAAGTTGCAACTTGTGTTTGGGGACTGGGCAATAAGACTGACTGCACAATAGCCCGCTAGGGGCTGAAGTGTTCAGAGGTGTTTGGGGTGCGGGAGTGTTCTGAAAATGGGAGAACATAATGGGTGCTTATAACCAaatgtttgttcattttctgtATTGAGAGGTTTTAATGACCCTCCTTTAACACTAAAGGAATTCTAGGTAAACAGcatttttgtggtttgtttagGAGACCTGAATTTGAGTTCCCATTTGAAGACTAAGGGAATTTGCAGGGTTGGGGTTCTTGCTGGGTTGGGGATGGGAATGGGAATAACTGGTATTTGTATCCCAATTGTCACTGACTACTGACATCAAGTTGCAGTTGTCTGCATGACAGTCCTTGGGAATTCCCCGTGAATAAGTAATCAAAAATGAGACGTGTGTTTTGGTGGATCAACTTTGGCTACTATGGGATGTTGCAAAAGGGTGTGTCGGGTTACCAAAACAGGCTTAATTGGCTAAGTACATTTGCAAAACAAGGTTGGTGATGTGTTTTGGAAAATTGCAGCACCCTATAGTGGCATGGTTTGAATCCAGACTTTTATTCTCTACTCTACAGCGGCCTGATATGCACGCAGATAGCGTATTATTAAAATTGACCATATGCTCTTATTTTTGGggagggagaagaaaaaaaaacaaatacactatCTGTGTGGCTTTAGGTGAGAGAATGGAAGTCATGCAAGGTTTTGGCAGCTGCCTTGCAATTTTTACTTTTGGGTAACTATTTGCCCTGGAGAACACAGCATATCCCACAGGTGTTGGAATGCATGGTCACCTGTCTGGACTGCTGTGTGTTGGCGGGATGTGCTGTGGACTTCAAGATTTTCTCTGAAGATTGAGCTGGGGTGCGTCTCACCATATCTATTGGAATCATTAAAACTGTTCATCCAAAAATCTCAAGCTcaattttcaggttttttttttttttttttgggtgggttGGGATAGGGATTGCTGCCCTGATGCATCTTTACTTTTGTTCTAGCACAGGGATGAGTGTGTACTTGAGGACTGTGATGGTAACACCTTTGGTGTCTTTCAGTAACCGGATTTCATCTGACAAACTACCATATACAGTGGATTGGgtttaataaaactgaattagTTGGGATAGAGCAAGGGAAACTGCTCCAGTCCTCCAGTCTGCTGATCCTTGGTTACTGTCTGACTGTAAAGAAtgtaaaacaaaagtaaagatGAATTGGCTGGATGGGTTGGGAGGGATGGTTTAATTGGGAAAACAAGCAAAATTGTGAAGCCACAAATTGGAGTAACAGGGGTTGGAAAGTTTGTTGTAAAAATGCCctgaatatttttcttttctactaTTTAATGAATTAAGTCTAATTGAcaaccaaatttttttttttttttctttgtttgttttttgtttgtttgttttttttaaattggcaATTTTGTCAGTGATGCTTGTTACAAATTAAAATGGAATCTGCTTAATTGGAAACTTTGTTTGAATAAAGCTCACTGAAATTCA

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12614 DDX6, RCK, DHH1; ATP-dependent RNA helicase DDX6/DHH1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120875 lncRNA upstream 21733 20055032 ~ 20055232 (+) True G102124
TU120855 lncRNA upstream 24283 20052310 ~ 20052682 (+) False bcl9l
TU120859 lncRNA upstream 77291 19999392 ~ 19999674 (+) True G102108
TU120857 lncRNA upstream 78882 19997871 ~ 19998083 (+) True G102106
TU120849 lncRNA upstream 93818 19982947 ~ 19983147 (+) True G102098
TU121062 lncRNA downstream 302935 20395867 ~ 20397389 (+) True G102285
TU121063 lncRNA downstream 302935 20395867 ~ 20399958 (+) False G102285
TU121065 lncRNA downstream 329089 20422021 ~ 20424905 (+) False G102286
TU121067 lncRNA downstream 329089 20422021 ~ 20430288 (+) True G102286
TU121064 lncRNA downstream 367329 20460261 ~ 20461015 (+) False G102286
XM_026913610.2 mRNA upstream 23823 20004356 ~ 20053142 (+) False bcl9l
XM_026913607.2 mRNA upstream 23823 20004358 ~ 20053142 (+) False bcl9l
XM_026913606.2 mRNA upstream 23823 20004358 ~ 20053142 (+) False bcl9l
XM_026913611.2 mRNA upstream 23823 20004358 ~ 20053142 (+) False bcl9l
XM_026913609.2 mRNA upstream 23823 20004358 ~ 20053142 (+) False bcl9l
XM_026914098.2 mRNA downstream 4763 20097695 ~ 20115417 (+) True treh
XM_026914100.2 mRNA downstream 4763 20097695 ~ 20115417 (+) False treh
XM_026914235.2 mRNA downstream 265281 20358213 ~ 20360195 (+) True ttc36
XM_026914159.2 mRNA downstream 480349 20573281 ~ 20629325 (+) False trip12
XM_026914157.2 mRNA downstream 480384 20573316 ~ 20629325 (+) False trip12
TU120293 other upstream 953088 19122612 ~ 19123877 (+) True G101602
XR_004578298.1 other upstream 955839 18957428 ~ 19121126 (+) False sema4ba
TU120151 other upstream 1282692 18793635 ~ 18794273 (+) True G101466
TU120119 other upstream 1336967 18738343 ~ 18739998 (+) True G101434
TU120104 other upstream 1477590 18598714 ~ 18599375 (+) True G101419
XR_003402807.2 other downstream 933095 21026027 ~ 21097841 (+) False LOC113526807
TU122021 other downstream 1694184 21787116 ~ 21794669 (+) False zbbx
TU122269 other downstream 2859745 22952677 ~ 22981150 (+) False LOC113526422
trnak-cuu_22 other downstream 3070175 23163107 ~ 23163179 (+) True trnak-cuu_22
XR_003402832.2 other downstream 3179126 23272058 ~ 23272208 (+) True LOC113527010

Expression Profile