RNA id: TU120999


Basic Information

Item Value
RNA id TU120999
length 2667
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G102224
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 20089591 ~ 20092328 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTTTGGATGAACAGTTTTAATGATTCCAATAGATATGGTGAGACGCACCCCAGCTCAATCTTCAGAGAAAATCTTGAAGTCCACAGCACATCCCGCCAACACACAGCAGTCCAGACAGGTGACCATGCATTCCAACACCTGTGGGATATGCTGTGTTCTCCAGGGCAAATAGTTACCCAAAAGTAAAAATTGCAAGGCAGCTGCCAAAACCTTGCATGACTTCCATTCTCTCACCTAAAGCCACACAGatagtgtatttgtttttttttcttctccctccCCAAAAATAAGAGCATATGGTCAATTTTAATAATACGCTATCTGCGTGCATATCAGGCCGCTGTAGAGTAGAGAATAAAAGTCTGGATTCAAACCATGCCACTATAGGGTGCTGCAATTTTCCAAAACACATCACCAACCTTGTTTTGCAAATGTACTTAGCCAATTAAGCCTGTTTTGGTAACCCGACACACCCTTTTGCAACATCCCATAGTAGCCAAAGTTGATCCACCAAAACACACGTCTCATTTTTGATTACTTATTCACGGGGAATTCCCAAGGACTGTCATGCAGACAACTGCAACTTGATGTCAGTAGTCAGTGACAATTGGGATACAAATACCAGTTATTCCCATTCCCATCCCCAACCCAGCAAGAACCCCAACCCTGCAAATTCCCTTAGTCTTCAAATGGGAACTCAAATTCAGGTCTCctaaacaaaccacaaaaatgCTGTTTACCTAGAATTCCTTTAGTGTTAAAGGAGGGTCATTAAAACCTCTCAATacagaaaatgaacaaacattTGGTTATAAGCACCCATTATGTTCTCCCATTTTCAGAACACTCCCGCACCCCAAACACCTCTGAACACTTCAGCCCCTAGCGGGCTATTGTGCAGTCAGTCTTATTGCCCAGTCCCCAAACACAAGTTGCAACTTTAGTGCAGGACAGATAGgtaaaggtttctttttttagctCTGTAGTTTTTGAGaaaattggattaaaaaaaaaaaaaaaacagaaaaaaacagaacacaagACCTGTTTCCTTGAGAGCTACATTTGTCAATTCCCATTTTTTGGACTGTCTGCATTTGTTCTGACTTCTGAATGGCAGACTCCCCCCCCCCCAAAGCACatcttttttctccatctgAAAGCATCATGTACCAGTGCCAATGGCAGTGAACAATGATCAGTGTAACAGTATCATATACCATGATGCAAATATTTTCTCTCATATGCGAGTCACCATGAACAGGGACCCAACGAGTGCTTTGTAAGTCAGTGGAACAAGCAAAGGCTGGAGAGCAGATAATCTAGTTAAGCTACTAACATCAAGATGAGGTGCCCATAACACCACTGATAGAGGTTTAACTAAAAATGCTTTGAACTGTTCGGGACATTTTGTGCACAGTAAATAAACCTGGCCAAtgcttcaaaaaaataaataaatctggagtccaattttttataaacaaaagatCTGACATCACTTCAAGTtttaagcctttttttaaatcaccgAAAAGGTGACAGCTTGACAGAAGCAGGAAAAGGAAGGAGATGCCATCCAGTGCTGACAGAATCCTGCATCTTTGATGTTTCTTACATAACCCTCCAGCCTTTTAGCTTGTTTTATAAAAGatccattaaaaatgaaatgaaagtattTACAAAGTTTACATTGTGCCAAAATTGATTTCAATGGCACATCTACGACAATGTGTAGCCACCCAAAACGAATGAGAACTGCAATGGAACAATAATGGGAaggagggggggaaaaaaagttccAATATTTCCACATTGATCAGGCAGAGGAATCACAGCAGGAGGAAAAGGCTGGCTGGAGTCTCTGAGCAAGTCTCTTGTCGTTTTGGAGCACTgaagaaaaagggagagagtCAGTCTCTAAGAAGCACATGTTCCATGACAACAAATGAGAACGCCACTTGAGCCATTTTAGGGGTACATGAAAAATGCTGAGAAAACATCAAGTCCCGCTTTCATCACCAAAATCATAATCAATACCCAGATTGAGAGGAAAGGCCGCTTTTGCACACCTTCCATACATTATGGAGGCAGCCCTTTCCCTCCACAAAATCTACTTGGTCTATTcctccaaaacaaacaataaaaaaaaaaaaaaaaattccaaaaagcACCAGGGGATGTGTAATGATTGCTTCTGAAAACCAAGtagaaattaaaagtaaataaagggTAACAGCAGGTGACATGAGAAGGGCAAGATCTGGGAAAAACATTATTACTTTGAACAAAGTTCGACTGCTTGTTAAGGCACTTCATACAAATAAccaaataacatgaaaataaagagGTGCTGGATGGAAAAAGCTGGGTCTGAGGGCCAGTGGGTGATGTTCAGGTAGGTGAAAAGTAGTCGCATTTTCTCAATTAATAAATAGGATAATTAGCTTCCATCATCCTCTTCTACCCTTCTCTCTCAAGTGCTTTAGAATCTTCAGAATGTTAAATGACGCAGCAGTCCTTTTAAGGGCCATGACATTTTTCCTCcgttattgtcctgtttcaaAGAAATTCCTCATGGTGGCACAAAaaaggaagacaaaaaaaataaagagaagggACAAAAAtgtagagaaataaaaagaaagagtaaGGGGGTAGTGGCTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120907 lncRNA downstream 89268 20000101 ~ 20000323 (-) True G102147
TU120906 lncRNA downstream 90410 19998963 ~ 19999181 (-) True G102146
TU120887 lncRNA downstream 121814 19943711 ~ 19967777 (-) True G102129
TU120832 lncRNA downstream 234828 19854530 ~ 19854763 (-) True G102082
TU120685 lncRNA downstream 503752 19585640 ~ 19585839 (-) True G101955
TU121000 lncRNA upstream 656 20092984 ~ 20093802 (-) True G102225
TU121045 lncRNA upstream 152007 20244335 ~ 20290991 (-) True G102270
TU121046 lncRNA upstream 165004 20257332 ~ 20263140 (-) True G102271
TU121048 lncRNA upstream 189857 20282185 ~ 20356597 (-) True G102272
TU121267 lncRNA upstream 265887 20358215 ~ 20359541 (-) True G102434
XM_026913612.2 mRNA downstream 35155 20051332 ~ 20054436 (-) True LOC113526513
XM_026913684.2 mRNA downstream 592598 19407050 ~ 19496993 (-) True pik3c2a
XM_026913687.2 mRNA downstream 592601 19407050 ~ 19496990 (-) False pik3c2a
XM_026913714.2 mRNA downstream 756161 19309888 ~ 19333430 (-) True dhx34
XM_026932413.2 mRNA downstream 1347867 18734427 ~ 18741724 (-) False znf710a
XM_026913745.2 mRNA upstream 122814 20215142 ~ 20292323 (-) True nectin1b
XM_026913303.2 mRNA upstream 270002 20362330 ~ 20377332 (-) True si:ch211-132b12.7
XM_026913555.2 mRNA upstream 290482 20382810 ~ 20389633 (-) True ccnp
XM_026913651.2 mRNA upstream 303538 20395866 ~ 20416574 (-) True akt2
XM_026913362.2 mRNA upstream 329945 20422273 ~ 20453147 (-) False vaspb
XR_003402829.1 other downstream 109332 19980069 ~ 19980259 (-) True LOC113527007
XR_003402833.1 other downstream 738648 19350762 ~ 19350943 (-) True LOC113527011
TU119855 other downstream 1892785 18187447 ~ 18196806 (-) True G101178
XR_004578368.1 other downstream 2002620 18086655 ~ 18086971 (-) True LOC117597604
TU118530 other downstream 4734954 15347166 ~ 15354637 (-) True tmem170a
TU121422 other upstream 861274 20953602 ~ 20966910 (-) True G102566
XR_004578325.1 other upstream 903013 20995341 ~ 21013100 (-) False sertad3
XR_004578321.1 other upstream 2142375 22234703 ~ 22306769 (-) False si
XR_004578330.1 other upstream 3498617 23590945 ~ 23610448 (-) True mmp23bb
TU123617 other upstream 4531188 24623516 ~ 24711368 (-) True G104473

Expression Profile