RNA id: TU121065


Basic Information

Item Value
RNA id TU121065
length 2639
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G102286
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 20422021 ~ 20464632 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggtAGTTTTAGTGgtagtttttaaacatcatttctCAATCCAAGTGACAATTCAGTCCAATATGTTTCATATATCATTCAATATGTGGGATTGCCAACTCCTTCAGACTGGACCAAAATAAGAACCCTTAGAAGACAGCAATACATAAGCAGCCTTAGAATGAGAGATTAGAATGATTTTGTCAACTGATGAACAGGATATGCTTATGTAACACACAGAGgcatttcagaacacacacacacacacagataacacaGAGGCATGTTGATGCAGCAGCAGCTGTATTTGGGTATAAAAGCAatgctccagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttcagtgtaaaaaaagtttcaaatatAGTAAAGCATTATAAACAAAAACCCAATAACAAGAAAGTCAATAATCACAAACCCTGCCCACCAAAagatcagtgtgtatgtgtgtgtatagatctGTACACTCACACTGCATATCTGGttgcacacacatttgtatCAAAGGCAATTTGGTCTAAACAGAAATACCGTTATTTCTatcaagttgattatttatatCCATTCCCAGAGCTGGAAGTTGATCCCAAAAAGAGCTGATTACCTGATTCTAGGCATTGGGACTCAAAAGTGATTTAGAGTCAATTCCACACATTAAAAAGATTCAGCTCAAATTCAGACAGGACATAGTGCAAGAACATGTGCTATTCAACTGTTAACATTGGACAATTGCCTCTGTTCTTGGCAAATACATGAGCAGTCTGGCAGTATTTCACTGTAGAGAAAACAGGGAGGGAAAAATGGCAAATTTGTGATAAAATGATGCCAATGCTAATGCCTTGAACCTGGCCAACCACAGAAGCTGAGAAGAGTCAGGTACACGTTTAAGTATAGGTAATATTAGCATAAGTTTATTCAggcattaaacaaaaaaagctcaCTGAGTTCATTGTCAAGGACACGCAGCCTAAAAGATTGTGTGGAATCAACTCCTttaacacttggaatcaactccaattgattatttaaatgtggTTAAATTGGAATGTGTTGCAGTGATGTTTGAATGAAGCGTTGCATAGTGACTGTGTGATTGTGTTCAggagtgtttattttatgtaatgcAATAATTAAATCCccctgagtgtgagtgtgtgtgtctgtgtgtctatccATCAGCTCATTAGTGTAACAGTGTACCTGGTAGTGACTTACAATACTCTATTATTGTTGGTGTGTATTATCAGGTTTGATGACTGTCTAGCTTGACTGCTGTGTGACAAACGTATGTAACACCCTGTGTACTCCAGCTATTGTGTTTACAGTACTGCTTCTGTTCTCTACACCAGTGTCCCTGTCTTGTCTGGAGCACACGTATCGCTGTCAATCTCATAGTGTACACCACATCACTCTAAGCTGCTCTGGATAGAAGTGTTTGCTGaaagaaaatatgtaaatgtagacTAAATCACATCACCATCCTGAGAGACTACGTGGCTGTACAGACGCAAAAGTTCtcaattttatacaaataagtCCAGCTAGAAACACCAGGAACCTGTCAGGATCATCAGAGAATCCATCTCTATGTCAGATCATGAGTTCCTTACAGGAATCTGTTCATTTGAGTATCTGCTTCAAACACTGATGTAAAATGCCTGGCCTGCAAGGCTGGCTACATGGCTAACTAACATataatatctatctatcccaGCAGGCAGctaatgttaaaaacaaaatcagtgtttctaGGAAGTATGCAAATCTATGTTGTTTCTCAAATCTCAGCATGCGTACTTCCATAGTGCACACTTGGAAAATCAGTGAGATGTAGTGTACTATTAATACCTGGATGGTGTGCTAGGACTGAGCAGAAATGAAGTGCTGCACACCAGATACTTTTTAATGCTTGGTGGTTGCAGTCTGCTCTAAGCAGCAGAAGGGATAGAGCCAGCAGAAGCCTTTATGGTTTGAAATTTTCATAATGGCCAACAAGAATGCCATTACACCACAGATACAAATGAGGAGAAAAGAGTTGAGGTGGATTTAAAATGTGCACTTGTTCTGGCAGAAGGTGTTCTGGCACAGCTTAATAATGTGAGGTGCCACATGATGCAGTGTCATTTATGTTTAGTGAAAAGCACTAGTGTTTGATTTGTGTTACTGCCTGATAAAAGTCCAGGTACTACATAGTGTAATAATATAGTGCATAGTGCGCGATTTGAGACAGAGCCCTGAATTGAAAAAATACCTCCACTGAAGCTAACTCGCCTGCTTGCTTGCTAGTTCCATAATACGGTTCACTAGTGAACTATGGCACAGACGCCTACTACTATTTACAAGACATAATCTTTAGCTGTGCTCTTTAGGAGCAGCACACAGTCTTGCATTTGGCTGTACTCTTAATATGTAGCGCAACACAGACCGGTTAGAGCAATGAAGAGCCATGcattcacttcctgtctgtaGACAAGTGCAAGTCTGGTGTGGTtgctgagtgagagagagagagagagagagagagagagagagagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgaaagagagagactatgTGCTTCTCCTCTGTAACTCCTGAATGATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121063 lncRNA upstream 22063 20395867 ~ 20399958 (+) False G102285
TU121062 lncRNA upstream 24632 20395867 ~ 20397389 (+) True G102285
TU120935 lncRNA upstream 329232 20092399 ~ 20092789 (+) False ddx6
TU120875 lncRNA upstream 366789 20055032 ~ 20055232 (+) True G102124
TU120855 lncRNA upstream 369339 20052310 ~ 20052682 (+) False bcl9l
TU121064 lncRNA downstream 35356 20460261 ~ 20461015 (+) False G102286
TU121068 lncRNA downstream 38140 20463045 ~ 20464632 (+) False G102286
TU121108 lncRNA downstream 48437 20473342 ~ 20473737 (+) True G102325
TU121110 lncRNA downstream 50899 20475804 ~ 20476171 (+) True G102327
TU121162 lncRNA downstream 153713 20578618 ~ 20581945 (+) True G102370
XM_026914235.2 mRNA upstream 61826 20358213 ~ 20360195 (+) True ttc36
XM_026914098.2 mRNA upstream 306604 20097695 ~ 20115417 (+) True treh
XM_026914100.2 mRNA upstream 306604 20097695 ~ 20115417 (+) False treh
XM_026914147.2 mRNA upstream 329089 20076965 ~ 20092932 (+) True ddx6
XM_034305142.1 mRNA upstream 368879 20035968 ~ 20053142 (+) False bcl9l
XM_026914159.2 mRNA downstream 148376 20573281 ~ 20629325 (+) False trip12
XM_026914157.2 mRNA downstream 148411 20573316 ~ 20629325 (+) False trip12
XM_026914160.2 mRNA downstream 148427 20573332 ~ 20629325 (+) False trip12
XM_026914156.2 mRNA downstream 148938 20573843 ~ 20629325 (+) False trip12
XM_026914155.2 mRNA downstream 148948 20573853 ~ 20630604 (+) True trip12
TU120293 other upstream 1298144 19122612 ~ 19123877 (+) True G101602
XR_004578298.1 other upstream 1300895 18957428 ~ 19121126 (+) False sema4ba
TU120151 other upstream 1627748 18793635 ~ 18794273 (+) True G101466
TU120119 other upstream 1682023 18738343 ~ 18739998 (+) True G101434
TU120104 other upstream 1822646 18598714 ~ 18599375 (+) True G101419
XR_003402807.2 other downstream 601122 21026027 ~ 21097841 (+) False LOC113526807
TU122021 other downstream 1362211 21787116 ~ 21794669 (+) False zbbx
TU122269 other downstream 2527772 22952677 ~ 22981150 (+) False LOC113526422
trnak-cuu_22 other downstream 2738202 23163107 ~ 23163179 (+) True trnak-cuu_22
XR_003402832.2 other downstream 2847153 23272058 ~ 23272208 (+) True LOC113527010

Expression Profile