RNA id: TU121238


Basic Information

Item Value
RNA id TU121238
length 478
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id G102415
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 20930187 ~ 20934094 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

caccatttTACCATCCTGGGCCCAAGTTTAGATGTGTAGTTGAATCGCATCAATCTGGCAACCATGCTCTCTTTCCAGACATTGCAGCAACATGGCGttCAGACCAGCTGCTGTTGGATGTCTGCAGAGAGTGCTTTTCTGGCTAAGGGGAGACCCTCTGGAGCATTGGTTTTATCCATTGGGATTTGAGTGGTTTGTGAAAACACGTGTGATGTACACGTTAGCCATTGCATTTGATTTTGTTACTCTGAGCTTCGTAGCAGTGCTGAAACATTGATGCTTCTTAtgctattatttaaatgtgtcagacttgtttgtaatttgttaaattgtctactgaaacaaataaaaagtagttAGAAAAATAGTTGATGATAGGTTAATTTATTACAAACTGAGAAAGTTGTAATCCTAAATTCTTTACAAATGTACctcaagtaataaaataatttttccaccacttatgtttttttttctt

Function

GO:

id name namespace
GO:0000003 reproduction biological_process
GO:0022412 cellular process involved in reproduction in multicellular organism biological_process
GO:0022414 reproductive process biological_process
GO:0048477 oogenesis biological_process
GO:0007281 germ cell development biological_process
GO:0007292 female gamete generation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121203 lncRNA upstream 80849 20847774 ~ 20849338 (+) False irf2bp1
TU121205 lncRNA upstream 80849 20847774 ~ 20849338 (+) False irf2bp1
TU121172 lncRNA upstream 243999 20638760 ~ 20686188 (+) False pid1
TU121171 lncRNA upstream 243999 20667144 ~ 20686188 (+) False pid1
TU121167 lncRNA upstream 322593 20606602 ~ 20607594 (+) True G102374
TU121214 lncRNA downstream 5319 20939413 ~ 20950991 (+) False prx
TU121459 lncRNA downstream 70242 21004336 ~ 21004721 (+) True G102585
TU121596 lncRNA downstream 214990 21149084 ~ 21194404 (+) True G102703
TU121821 lncRNA downstream 570650 21504744 ~ 21505622 (+) True G102903
TU122075 lncRNA downstream 1115080 22049174 ~ 22049382 (+) True G103130
XM_026914467.2 mRNA upstream 5898 20906063 ~ 20924289 (+) True pld3
XM_026913314.2 mRNA upstream 65993 20860782 ~ 20864194 (+) True foxa3
XM_026914092.2 mRNA upstream 81807 20844674 ~ 20848380 (+) True irf2bp1
XM_026913988.2 mRNA upstream 110859 20773604 ~ 20819328 (+) True sphkap
XM_026914123.2 mRNA upstream 244001 20663638 ~ 20686186 (+) True pid1
XM_034304979.1 mRNA downstream 5322 20939416 ~ 20967271 (+) True prx
XM_026913403.2 mRNA downstream 37495 20971589 ~ 20985096 (+) True si:ch211-14c7.2
XM_026914458.2 mRNA downstream 56890 20990984 ~ 21003744 (+) True kcnk6
XM_026914166.2 mRNA downstream 91934 21026028 ~ 21102216 (+) True LOC113526807
XM_026914167.2 mRNA downstream 91934 21026028 ~ 21102216 (+) False LOC113526807
TU120293 other upstream 1806310 19122612 ~ 19123877 (+) True G101602
XR_004578298.1 other upstream 1809061 18957428 ~ 19121126 (+) False sema4ba
TU120151 other upstream 2135914 18793635 ~ 18794273 (+) True G101466
TU120119 other upstream 2190189 18738343 ~ 18739998 (+) True G101434
TU120104 other upstream 2330812 18598714 ~ 18599375 (+) True G101419
XR_003402807.2 other downstream 91933 21026027 ~ 21097841 (+) False LOC113526807
TU122021 other downstream 853022 21787116 ~ 21794669 (+) False zbbx
TU122269 other downstream 2018583 22952677 ~ 22981150 (+) False LOC113526422
trnak-cuu_22 other downstream 2229013 23163107 ~ 23163179 (+) True trnak-cuu_22
XR_003402832.2 other downstream 2337964 23272058 ~ 23272208 (+) True LOC113527010

Expression Profile