RNA id: XM_026914293.2


Basic Information

Item Value
RNA id XM_026914293.2
length 3186
RNA type mRNA
GC content 0.46
exon number 18
gene id zbbx
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 21762447 ~ 21813210 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGAGCGTTCAATGAGTCAGAAATGGAACTCGCTTTAGAAAACAGTTTGACTTTTTGTAACCTTTTGTTTGATCACAGTTTCATCTTTTGTCACGTCTTTCAGGGGGAAGTCAAATCTCTAAGCAGGTTCAACAACCATGAATTTAAACAACTTTGTGGTCCTTCCCAACAAGCCTAAATCAGTAAAGCTAAATGTCAGAAATTTGCGTGAGCTGCGAATGGAGACAGCACAGCTCAGCCAGGACAGCAAGGACATGGAGAGCCGCCTGCAGCAACTCCGAGAAGTCATGAGCCgtgagaaagaggagagagaGAAGAATGGTGCTTTTCGCTGGAAATCTGCTCAGACCCATGATGGGACAAGGGACAAAGAGAAAAAGCTCAACAAAACTCCCACCAGCAAGATGAAAATAAGAGTGCTGAAGGATGAGCCTTTACcagTTGAAAGGGTGCCAGAGCCTCCACCTCCAAAGCATGGACAGAGCAGAAAATCCAGGCTGAAAGGAAAAGTGTGTGGCCAGTGTGAAGCTCGAACTGCTGGACTGgtgtGTGCAGAATGCGCAGAGGATTACTGTGTCAGCTGCTTTGCTAAATTCCACCAGAAGGGGGCACTAAGGTTCCATCATATCATTCCCATGCAGGCCGAGCTCCATACCTCCATCAGCACACTGGATGTGGTGAATCGTTTTCAGAAGAAGACTGAAcgtgaagaagaggaagatgtTTGGTCGAATCATGGTGGTGATGGGGGAACAGATCCAGAACGCAGTGCAACATCTACACTTCTCCAGCCTGTTTCTAATAACCAGATGCACAGCACAcaaGTGTTGTTTGTGAATGATGCGGATGAGGAGAATGAAACCTCTTTACTGAGAGGCAATTTTGATGAAGAGGAATCTTCCAGAAGTTTTCAGCAGGCTCTGAATGAGTGGAGAGCAGGAAACACACATGGCGACAGAGAACATCATGAACCCAACCGCAATGTACAAACTGCTCgaccagTAAGCATGGAGGTGATGGGGACCCAGGCTGGAGGAAGAACTCCCATATTTATTGAGTTTAGGGATCATGGACTAAGCTACATGGAAAGGCTGCTGCTGAAGAAACACCGCAGaacACAGATTGAATCTTACCAGTTGCTTTCCACCCCAAGATCCCCACAGGACCCGATTACAGACACTCTCACACAGCCTGTTGAAGAGACCCATGAGACTCATGAACTAACAGCTGAGGAGATGGATCTGCACCGTTACTGCGTCTCTCTTTTTGCCATCTCCAGCTcagcagaagcagaagaagtGAATAACATTTTCAAATCATGCCTGAGTATCACCGAGATAGATGAGACAGCAGGAGACCCTCTGGTGGATGCTTCCTTTGGAGTCAAGCAGAGAGATGATAAAAAAGTGAATCAAGAAGGAAATGCTTTAGCGATGCCTTGCCAAGCAGAAGAGGAAGTGTTGCTTCCAACAAAGCCACTTGATTTCTCACTAAAAACTCAAACACTGGCTAATGAAACAGTTCTGAGTGGGTCAGTAGAATCATTCTCACAATCCCCACCATCAGACCAGCTCCCGTCATCACTCACTCTCCATAAGCTCCAAAAATCTGTGGATAGCTCTACTTTAACAGGCTCTGAAATGCTAAACCCTGAACAATATAAGGAACATGCATTTCAAGAAGCACAATCACCAGAACTCCTCAACCCACACATATCAAGATATCCATCAAAAACCACGTCAACACTCAAATGTACAACACAGGTTAGAGATTCCTGCTCTTCtacttctctttcttctcaaTCCCATAGTCCATTAACTTCCACATCAATGCAGTGTCAGTCACCAGCATTCCCTGTGTCCTCCAATCAAAAACTGAGTCTGACTCATCCAGAACACTATCAAAGAAGCTCTAGCACTCTGAACCCCCCATTCACTCCAAGATCTCCACTAAAAGCCACATCAACACAGAGCTTAGATTCCTCTTTTTTTATCCAATCCCATGGCCCATCACCTTCCACATCAATTCAATGCCTCTCGCCAGCATTTTCCATTTCCTCCAGGCTAAAATTGAGCCCAACACCTTCAGAACTCTATCATATTAGCGCTAAAGCTCTGACCCCACCGTCTACTAAATCTTTCTCTCACACCCAAAGTGGTAACACTCCATCACAATCCCAGCCACTTTCAGAACTTCAGAAATCACCTTTATCTGCAGAGCAGTCATCCTCAGACGACGAGGAACCATATTTCCTTCCTTTAGGATCGTCGTCATCTTCGGAAAAGTCAGAAATCCTGCAAAGCTCACCTCCTCTTCACCTGAGCTTATCAAATTCAGATATGTCAAGCGACAGTATTGGCATGATTCCCACTGATGAAGACTCTTCTGATGAAGAAATGAGGAGATGTGCACTGCAGGACATgggggaagaggaagagagaaacacGTTCTCTTCCCCTCCATCTCTGTTTCCCACTGCAGATGTTCCTTTCCCCTCTCAGAGCCCCACAACTGAAGAGCAGCCAGGCTTCTTTACCAAACCGTCCCTGGCTGTAAGCATTTTAGCACAGAGACATAGCAGTGTATCCACAACCTACCAAGGCCTGGATGGATTCTTCACACTGGGGCTAGAATCCAGGTCTGGTCCACTGAGTCCGGCTCCATCACACGCTCCTCCAGAGATGCAGACACACTCCACAAACTCAGAGGCCTTTATGTCAGgTGACAGTCTCTGGAGGCCAGAGAGCAGCCTTCAACATCACGCAGAGGCAAAGCTTGTTGGTGTTGTGATTAACAACCAGCCAATCAGCATCATCTCGCGATCTGTCACACCAATCAGTAAAATGGAGCCATCCCGGAGGCTGGGTCAATCAGGTGCCTCTGCTCCAGTCACTCACAATGTTTCTCGTCCTATGTGTGCATCTCGTCCCATTTCACGTGCTGCTCTGGAGATCCTGGAGGTTCAGAGCGTGGAGCAAGCCGAgatcacacacatcaaacaggatgaggaggatctgctCACCATCACCTCTCTGGAGGAAGAGTTCAAACGGATGAGCGCTGAGCCAAATTTATTTGTATCAGATGGACATACAGACAATAGaaattggacaaaaaaaaatgatttttgaaaTATATTCAAATTTTGCATCCATATAGTAGCTTTTTTGGCATGATTAAATCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121821 lncRNA upstream 256825 21504744 ~ 21505622 (+) True G102903
TU121596 lncRNA upstream 568043 21149084 ~ 21194404 (+) True G102703
TU121459 lncRNA upstream 757726 21004336 ~ 21004721 (+) True G102585
TU121214 lncRNA upstream 811456 20939413 ~ 20950991 (+) False prx
TU121238 lncRNA upstream 828353 20930187 ~ 20934094 (+) True G102415
TU122075 lncRNA downstream 235964 22049174 ~ 22049382 (+) True G103130
TU122086 lncRNA downstream 315159 22128369 ~ 22170834 (+) True G103140
TU122206 lncRNA downstream 713165 22526375 ~ 22526736 (+) True G103246
TU122232 lncRNA downstream 878882 22692092 ~ 22692310 (+) True G103270
TU122262 lncRNA downstream 1053530 22866740 ~ 22869283 (+) True G103297
XM_034304980.1 mRNA upstream 28876 21689428 ~ 21733571 (+) True LOC113526346
XM_026913273.2 mRNA upstream 80124 21664634 ~ 21682323 (+) False pdcd10a
XM_026913274.2 mRNA upstream 80124 21664886 ~ 21682323 (+) True pdcd10a
XM_034305270.1 mRNA upstream 144111 21590627 ~ 21618336 (+) False golim4a
XM_034305146.1 mRNA downstream 1070061 22883271 ~ 22934025 (+) False fam168a
XM_034305148.1 mRNA downstream 1070084 22883294 ~ 22934025 (+) True fam168a
XM_026913425.2 mRNA downstream 1139371 22952581 ~ 22983599 (+) True LOC113526422
XM_026913424.2 mRNA downstream 1139371 22952581 ~ 22983599 (+) False LOC113526422
XM_034304967.1 mRNA downstream 1140165 22953375 ~ 22983599 (+) False LOC113526422
XR_003402807.2 other upstream 664606 21026027 ~ 21097841 (+) False LOC113526807
TU120293 other upstream 2638570 19122612 ~ 19123877 (+) True G101602
XR_004578298.1 other upstream 2641321 18957428 ~ 19121126 (+) False sema4ba
TU120151 other upstream 2968174 18793635 ~ 18794273 (+) True G101466
TU120119 other upstream 3022449 18738343 ~ 18739998 (+) True G101434
TU122269 other downstream 1139467 22952677 ~ 22981150 (+) False LOC113526422
trnak-cuu_22 other downstream 1349897 23163107 ~ 23163179 (+) True trnak-cuu_22
XR_003402832.2 other downstream 1458848 23272058 ~ 23272208 (+) True LOC113527010
XR_003402831.1 other downstream 1460098 23273308 ~ 23273458 (+) True LOC113527009
XR_003402830.2 other downstream 1461149 23274359 ~ 23274509 (+) True LOC113527008

Expression Profile