RNA id: TU122206


Basic Information

Item Value
RNA id TU122206
length 362
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G103246
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 22526375 ~ 22526736 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctgcgatcatccactttagttgtcttctgtggtcttccaggcctttcgatgttgttgagctcaccagtgctttctttctttttaagaatgtacccaactgttgatttggccacacctaaggtttttgctatctctcttatagatttatgttgttttttcagcctaatgatggcctccttcacttgtattgagatctccttggacttcatattggtagctccagtcgaacagctgccaaatgccaactcaatacctgatatcaactccagaccttttatctgcttcatttgtcttgaagtaacgagggaatggactgcacctggtcaattaacttcttgtcagtcaattatccaaataccttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122086 lncRNA upstream 355541 22128369 ~ 22170834 (+) True G103140
TU122075 lncRNA upstream 476993 22049174 ~ 22049382 (+) True G103130
TU121821 lncRNA upstream 1020753 21504744 ~ 21505622 (+) True G102903
TU121596 lncRNA upstream 1331971 21149084 ~ 21194404 (+) True G102703
TU121459 lncRNA upstream 1521654 21004336 ~ 21004721 (+) True G102585
TU122232 lncRNA downstream 165356 22692092 ~ 22692310 (+) True G103270
TU122262 lncRNA downstream 340004 22866740 ~ 22869283 (+) True G103297
TU122267 lncRNA downstream 372327 22899063 ~ 22899437 (+) True G103301
TU122270 lncRNA downstream 415973 22942709 ~ 22983497 (+) False LOC113526422
TU122297 lncRNA downstream 473631 23000367 ~ 23006640 (+) True G103331
XM_026914293.2 mRNA upstream 713165 21762447 ~ 21813210 (+) True zbbx
XM_034304980.1 mRNA upstream 792804 21689428 ~ 21733571 (+) True LOC113526346
XM_026913273.2 mRNA upstream 844052 21664634 ~ 21682323 (+) False pdcd10a
XM_026913274.2 mRNA upstream 844052 21664886 ~ 21682323 (+) True pdcd10a
XM_034305269.1 mRNA upstream 908039 21590628 ~ 21618336 (+) False golim4a
XM_034305146.1 mRNA downstream 356535 22883271 ~ 22934025 (+) False fam168a
XM_034305148.1 mRNA downstream 356558 22883294 ~ 22934025 (+) True fam168a
XM_026913425.2 mRNA downstream 425845 22952581 ~ 22983599 (+) True LOC113526422
XM_026913424.2 mRNA downstream 425845 22952581 ~ 22983599 (+) False LOC113526422
XM_034304967.1 mRNA downstream 426639 22953375 ~ 22983599 (+) False LOC113526422
TU122021 other upstream 731706 21787116 ~ 21794669 (+) False zbbx
XR_003402807.2 other upstream 1428534 21026027 ~ 21097841 (+) False LOC113526807
TU120293 other upstream 3402498 19122612 ~ 19123877 (+) True G101602
XR_004578298.1 other upstream 3405249 18957428 ~ 19121126 (+) False sema4ba
TU120151 other upstream 3732102 18793635 ~ 18794273 (+) True G101466
TU122269 other downstream 425941 22952677 ~ 22981150 (+) False LOC113526422
trnak-cuu_22 other downstream 636371 23163107 ~ 23163179 (+) True trnak-cuu_22
XR_003402832.2 other downstream 745322 23272058 ~ 23272208 (+) True LOC113527010
XR_003402831.1 other downstream 746572 23273308 ~ 23273458 (+) True LOC113527009
XR_003402830.2 other downstream 747623 23274359 ~ 23274509 (+) True LOC113527008

Expression Profile