RNA id: XM_026913426.2


Basic Information

Item Value
RNA id XM_026913426.2
length 3253
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC113526422
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 22942709 ~ 22983599 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAACACATTCAGTCTCCATCATTCTCTTCCTGAAACTAGAGATGCTATGCTGGGTGCCTTAGCTTCAAAGCTGTGTTCAAGAAGGCAGGGCATTTTCAGAATGTAAATCAATCATTGCCCGGATGGCGAAcgcttcctcctcatcctctgtTCTCCCTTACTGCACCTACAATGAGGATTTTAAGCGCATCCTCCTCCCtgtggtgtacagtgtggtCTTCGTCATCGGCTTGCCGCTCAATTTTGCTGTCATCCTGCAGCTGTGGGGAACCAGGCGTTCCCTGACTCGGACAAACATCTACACGCTGAACCTGGCGGCGGCCGACTTCCTGTATGTGTGCTCTCTCCCTCTGCTCATCTACAACTACGGTAGTCGAGACTATTGGCCCTTTGGAGAGTTGATGTGCCGATGGGTTCGTTTCCAGTTCTACAGCAACCTGCACGGCAGCATCCTTTTTCTCACCTGCATCAGCATTCATCGCTACCTGGGCATCTGCCATCCGCTGTCCCTGTGGCTCAGAAAAACAGGACGTAAGCTGGCATGGGctgtgtgtgccagtgtgtgggTTATTGTAGCACTTCTATGTGCACCTACGTTTGAATTTGCAGCAACAGGCATCCAGAGAAACCGTACCGTGTGCTACGAGCTGAGTGTACCTGAGCGCTCGCAGCAGTACTACCCATACGGCATGGCCCTCACCTGCCTGGGCTTTCTGTTGCCCTTTATGGTCATTGTGGTGTTGTACTGCAGGATGGCACGGGTTCTGTGCCAACCGGACGACGCCAGTGGTGAAGCAGCCAAAGGAGAAAAGTGCAAAGCTGTGAGGATGATCGCCATTGTGGTGCTGGTTTTTGCCGTCAGCTTCCTGCCATTCCACGTGACCAAAACTATGTACCTGCTAGTGAGGACCTTGCCTAATGCTCCATGCCAGCTCCGGAACTTTTTATCGGTGGTATATAAGAGTACGAGGCCCTTTGCTAGCATGAACAGTGTGCTCGATCCCATCCTATTCTACTTCACACAGGCCAAATTCAGACGCGGCACACGCAGCCTGATGCTCAGGATCACTACATTTAGAGACAACagcaaacaaagagaaagaacacCACAAAGCCTACTAAGCAAAAAATCAGGAAGggtataaaatatgaaagcatCTTCCCACCAAGGTTCACTACCTACTGAGGAAGAGTTCCAGAACTCTCTTGAGTGAGAACTTCATCGTTCCTGACCATCATTAAATATATGATGCAAACAGTATAATGACATTTCACCACCCAGCAAAATGACAGTAAAAGAGTGAACATGAATTGTGAATAAAGTACAGaaatgaacaacacatttaaaatggaaaaaaaacctacatTTTCTTTCCTAAAACACTAAAATCCACATAATGACTCTGCAGGTGTCTGCAATGTTTGCTATGTCCCTTTAGCTTGCTGCCACAAGGTTATtagtaatgaataattattactACAATTAATCACATCTTCACATTTTCCATGAATTCGCTTGAGCCTGAATCAGTCTATCAAAGGTTGACTTAACTGTAGCCATTTTTTAAACCAACAAATATACAGGATACATATATGGAATATGTCTTCCAGTGCAGGATTCAAGACTTTACTGAGAGTTTTTCCccataaacataaaacataaaatcagcATAACATATCAATCTCAATTACTCATAATCCATGGACTACTAAGTCCACAGTCTACAAATACTCAGTCTACAAATTCTTTATGATCACTAAAGTCATGAGGACAGAATATAAGGGCTTAAAAGACAAAATCTATTCTCAAAATCTTTgtatagtacacaaagtttccagtgAACCTGGACTTTTCGGACAAACGTCCTTCATCGGCTGTGTAAGGATAGTGCCTCTGAGGCTGTAGAGAAATCtgtcatatatttataaaatgtgaaaatattatcTGTCTTTTCatatcatgtattttcaaatctagttttaatcattatttcTGACAAATATCTGTCTGGTCTGAAAACCGGGCTTATCACCATTGCATGAAGCACTAGCACTAAAAAGCATAAGAGAAAtgctttgtgtttatgtgtatacaCAATATGTCTATAAATGGAATGTATTATCATAAGAAGTGATAGcacagtggacaggggtcactGTCAAGTCATGGAAAATAGCCCACACTTTACAATAAGCCTTTTGCACtacccaaaaacagtttatacccAGGTCTTCAGCTTTCTtaagtggataatctcacctggattcTGTAGATTTTACCTTCTGCTGTAAGCATAAAGAAGGTCCTGTGCTCATctcaggactcttattcacaacacatcctttcaacacaatactgtttgtctttactcttctacacctgtatactgtaataatttataatccactgtgagtgtaaatgtaaatatagtacATGTGAAGGGAACCATCTAAGACTTAACGACTTCAGCCACTAGGTGGTGGGATTTACCAAGAAGAGCTGGCAGCAGTGCGCCTGCTCTTTCTGTAAACTGCACTTAGGTGCTCTGCCTCGTATCCATTTAAAGGGAAGGTATTTATGTTCTGAACCGAATTTCACACACCCTAGTGCTTCCTTAAGTAAGTATTTCTATAATGAGAAAATCTGACTGAATCTATAATGCAAGTAGGTGGGCTACACACTGTATAAATCCGTGAATAAATATATGAAGACTTAATGAATTGCACTCTTGTTTTGAGCATGTGGTGATGCATCTCACACTTATGACTTAAGACTACACTAGCAAACCTATAAATGGAAATGTGTGTAGCTGTTGAAAAGACATTTGTAGTGTAAATGCTGTGccatttgaatgtttttgatttttggCCTGTGAGAATATGACTAATTTGTGAATCTGTTGGGTGTCTTGCAGCTTTGTGAAGTTGTAAAACCTGTGCGTTCATGTCAACGCTTAAATGTGAATTTCAGAAATATAGAACTTTAAAAATAGGCATCACGGTGTTATTACCTGACTGGATATTGATATCATTTTGTACTTTTGCTTGTATCATGCCACAAAGTTTGCTGTTGCCTGCTTTGCTCATGTCCTTAGACATAGGTTATCTAAACTTTgcactaatatacagtattaatattcaataaaacCACTAGacattgtgtgtatgtcttTCCATGGTCTTTGTCTTCGGGTTTATTGTTATATGTATGTACAATGAGTGatcaaatacaataaaattgtATAAACCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122267 lncRNA upstream 75006 22899063 ~ 22899437 (+) True G103301
TU122262 lncRNA upstream 105160 22866740 ~ 22869283 (+) True G103297
TU122232 lncRNA upstream 282133 22692092 ~ 22692310 (+) True G103270
TU122206 lncRNA upstream 447707 22526375 ~ 22526736 (+) True G103246
TU122086 lncRNA upstream 803609 22128369 ~ 22170834 (+) True G103140
TU122297 lncRNA downstream 16768 23000367 ~ 23006640 (+) True G103331
TU122293 lncRNA downstream 122543 23106142 ~ 23106241 (+) True G103327
TU122322 lncRNA downstream 157248 23140847 ~ 23148816 (+) False relt
TU122343 lncRNA downstream 191952 23175551 ~ 23259191 (+) False LOC113526573
TU122349 lncRNA downstream 203553 23187152 ~ 23187663 (+) True G103376
XM_034305146.1 mRNA upstream 40418 22883271 ~ 22934025 (+) False fam168a
XM_034305148.1 mRNA upstream 40418 22883294 ~ 22934025 (+) True fam168a
XM_026914293.2 mRNA upstream 1161233 21762447 ~ 21813210 (+) True zbbx
XM_034304980.1 mRNA upstream 1240872 21689428 ~ 21733571 (+) True LOC113526346
XM_026913274.2 mRNA upstream 1292120 21664886 ~ 21682323 (+) True pdcd10a
XM_026913525.2 mRNA downstream 1810 22985409 ~ 23099891 (+) True LOC113526468
XM_026913526.2 mRNA downstream 1810 22985409 ~ 23098973 (+) False LOC113526468
XM_026913527.2 mRNA downstream 1810 22985409 ~ 23098973 (+) False LOC113526468
XM_026914305.2 mRNA downstream 129485 23113084 ~ 23148872 (+) True relt
XM_026914310.2 mRNA downstream 129485 23113084 ~ 23148872 (+) False relt
TU122021 other upstream 1179774 21787116 ~ 21794669 (+) False zbbx
XR_003402807.2 other upstream 1876602 21026027 ~ 21097841 (+) False LOC113526807
TU120293 other upstream 3850566 19122612 ~ 19123877 (+) True G101602
XR_004578298.1 other upstream 3853317 18957428 ~ 19121126 (+) False sema4ba
TU120151 other upstream 4180170 18793635 ~ 18794273 (+) True G101466
trnak-cuu_22 other downstream 179508 23163107 ~ 23163179 (+) True trnak-cuu_22
XR_003402832.2 other downstream 288459 23272058 ~ 23272208 (+) True LOC113527010
XR_003402831.1 other downstream 289709 23273308 ~ 23273458 (+) True LOC113527009
XR_003402830.2 other downstream 290760 23274359 ~ 23274509 (+) True LOC113527008
TU122865 other downstream 631504 23615103 ~ 23629723 (+) True G103830

Expression Profile