RNA id: TU122322


Basic Information

Item Value
RNA id TU122322
length 3359
lncRNA type sense_over
GC content 0.39
exon number 4
gene id relt
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 23113084 ~ 23148872 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaaaatGCAGCTGCCTTGGAAGAGTTGTTACTGGAATATGAGAAGAAGCAGACATCTGGTAGCAAAAGATCATCAATCAAGTTCCCTGGCTTCCTCCAGTTCCGCTCGTTGCCCAGGCTCTGTACCCACCATCAACACCTTCATACTATCAATGGTTTGGCCCCACGTTCTGGTCTCGGCTGCTCGCGCTGCAGTCAGAAGAAATGGCCACAAGTGCTGTTGCCCCTCACCATAGACACAAATAAGACATCCTGTGCCGCATCTATCCCCTCCTCACCTGGCGAGGGCAGGGTCCTCAATGTAGGAAGGTTCCAGGTGGCTCAGATCCTAGAGGGTGACCCTGTCTCTGTGGAGACGACCCCAGCAGAGTCCAGTGACACCGATTCGATAGACTCTACCAACGTGGAGCCTGCTGAAGAATTATCCCTTCTGGGCGTGCCCTCTTCTGCGAActctccctcctcaaagagcgGACAGGATatgagtgagtgaatgaacaaGTGGGAGAAAAAGTGAAGCATCCATCAGGACTACGTCATCAACACCACATTGAGCACAACCTCATCGGTGGGCTCCTAAGGAAGTGTCGAGGCTGAAGCAGGATGGGAACTGTATTCACCCCTATGGGGAGTTAGCcttgaattctggaaaacaggaaTTGGTCTTTGTAAGTGTTTTTGAAGCTATgttattatgttaaaaaaaagaaaaccatttGCCTCAGGCCTTGCGAGCTGAGAGTGAAAATTGTAAGTGAGAAAACTTTCAAGAGGAGAGACGAGACCTGGCATAGCAGCCTGATGCAAAACGTGAAATATAACTAAACATTATGGAAATTGTAGTGTAGATCTTTATAAATGTCCCGCCATGTAGAGTAAATCATTGCCCCTTCTTAAAGTTAAACAGTGGGCCAGTAAACATACAGAGAATATCCATCAAATGTCTTACTAATACTGAATAAATTTTAGTCGGCTGACATTGATAGATCACATTAGATAATCTGACAGGAACAGATATCTCAAACACTCACCTTTTTTATCTTCCAGCCTCCAAAACAGGTACAGCCTGTCATGCAGTTAAACCACTTATTTCACAGCTGTAAATAACTCCTAATATGTATAGTGTAGCAAGTAGGCTggtattaacatttattttgtattagGAGCATATGAAGCTCTTTCATGCTATAGACCTGTGCAGGGGCTTGATGGGTGGCATTAATTTTGTTCTCATGAAGAGATAATGCTCACCTCCTTTTCATGTCTGATTTGCCTGAATAATATGGTTCAAATTCTCAATGCATTAGAGTCAGCTCCTGCCTCTGAAGGTGGAATTGGGTCATGTTTTAAGTATTAAGATCAGAAAAGCTATATGCGTTATGCGTTTAGTTATATTTAGCTGCGCTGCTGTTGAGTATTAGTGTCTGAGCATTTGCTTTTAAATCCTGATCCTTCCACTTATTGTTCAATATATCAAACCGTAATGTTTTTCATGCCCACTGATAGGGGTGGTAAGGTTTGAAATTTTCACGGTAGGATaacctagtctaaaaatatcacgGTTTCACGGTATCGCTGTATTAAGcaaccatttaaaaatgcacaattcGGTGGTGAAAATGATAGGGAAAACTTAATAGGAAAGTTTTTTGGCAACgacttttccataaaatctccTAGCCAGTATTTATCACATTGTTAAAAAgctaaagctaaaaaaaagagTGGCTTAAGGGAGTCACAGCCTGACACAAAAGGGACCACCAGAGTAAGGAACTtgatcaggtaaaaaaaaagaaaaaagaaaaactgtaatagatggaaatgcatttttgtGGGTATTTTGAAGAAATGAACCATAAGGAAACCATCTGATTATACACTGTGAATAACCGTGAAACCACGACACCGTAACAACCCTGATCAACTGGGGCAGTAGAAATGCACTGCAAATGCCTCAGAAGGCTTTTTCATGCCACCTTCCTCCTCCCGAGGTGTTTAGGCCACACACTGCGCTCATGCACGTAAATCAATACATAAAGCACTTAATTAGCTGTGTGAGGTGTGAAAGTTCTGGGAAAAAGCTCTGTGTCCCTTTACGACTGTTCTAGGCTCTTCTTCCTCCACTATCTTGATATTGTCAAGCTATTAGAAAAATTAGTAGCAACACATTTAGGATTCagctttattatatttcatcTTTACTAAGAGGCCAAGaggtaaatacatttttaaatagggTTCCCTCTTGAGAGAAAGACTGAGCTTCCTAACATAGCTAGCTTTGATAGCTTACCAATGCTAGCAAGATAATTTCATACGCAGGTTGCACTAGCTATCTTAATTTAACCCTGAGAACATCTTGTTGCAATCTACTACTCGAACACATACAAATGCTAATGCAAACAGTAAAGCAAATGGTATTTCTGAGACACAGTTAGCACAGGTTGTAAACATATTAGACTCTTTGCGAAAAGGCATGCTGGTGTAGCAAATGCTTCACTATAACAATATGGTATTTGTTGAATATCGCAAAATATTGGTACATGTCTAACCTAGAGTTAAGCTTTTGTTTTAAACTAAAGAGCAATATAAGGGGGAATTAATGGCCCATCAAACCACTGTGATATCCCATGGTGCATCATCAAAGCTACCTCCCTGTGTAACTAGTTATCACTTATATTTACCTACaaaatttttgttcatttttttcatccttGCACAATTTAGCAAGAGGCCTCTGCATGTGTGAGAGTTTACACTGAAACGATGGCCGCTCGAAGCATAAgaattttgttttaaagtgaAGATACTGGTGGTACACCTGAAATACGCACAAGCACACGCGTGCATAGGCCTCTGCTTAGACAAAGCCACGAACCAGgtgatgaaaataaatgaactttatTGATTCTGGTGTATGGCGGATATTATCACTCCTCTATTTAGTATAATGTTCGCTGGAAACCACAATGTGAAAATACTATAGTCGAAAACTAAGTTATCATGTGAATTGCATTGGTATTCAAACATTGAAcaaatttcagattttcatgTTGTTAATGTTTtccttattttattcttatgtttatttttgaattttgaaaactCATGATGGCAGATAAAGCTACAAGCAacactgttactgctgtctaTATGCACATTTTATAAGGAATAgaattttatacataattttcCATTCAGCCCTgataaaaacagtattttattctatttttaggATCTGACATCTGTGGGTTCTACCATACTTATTAAGGTGTTAATAACCAGACTGATGTAATGAGAATGGAAAGAAAAGATTCTCTGCATcattattgctttttatttattttcattataaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122293 lncRNA upstream 34606 23106142 ~ 23106241 (+) True G103327
TU122297 lncRNA upstream 134207 23000367 ~ 23006640 (+) True G103331
TU122270 lncRNA upstream 157350 22942709 ~ 22983497 (+) False LOC113526422
TU122267 lncRNA upstream 241410 22899063 ~ 22899437 (+) True G103301
TU122262 lncRNA upstream 271564 22866740 ~ 22869283 (+) True G103297
TU122343 lncRNA downstream 26735 23175551 ~ 23259191 (+) False LOC113526573
TU122349 lncRNA downstream 38336 23187152 ~ 23187663 (+) True G103376
TU122607 lncRNA downstream 266679 23415495 ~ 23416103 (+) True G103606
TU122692 lncRNA downstream 397301 23546117 ~ 23546390 (+) True G103688
TU122709 lncRNA downstream 423735 23572551 ~ 23575616 (+) False serp1
XM_026913525.2 mRNA upstream 40956 22985409 ~ 23099891 (+) True LOC113526468
XM_026913526.2 mRNA upstream 41874 22985409 ~ 23098973 (+) False LOC113526468
XM_026913527.2 mRNA upstream 41874 22985409 ~ 23098973 (+) False LOC113526468
XM_026913425.2 mRNA upstream 157248 22952581 ~ 22983599 (+) True LOC113526422
XM_026913749.2 mRNA downstream 14830 23163646 ~ 23259257 (+) True LOC113526573
XM_026913750.2 mRNA downstream 14831 23163647 ~ 23259257 (+) False LOC113526573
XM_026913480.2 mRNA downstream 111806 23260622 ~ 23267820 (+) True LOC113526446
XM_034305398.1 mRNA downstream 111806 23260622 ~ 23264135 (+) False LOC113526446
XM_026914322.2 mRNA downstream 121277 23270093 ~ 23274655 (+) True rps3
TU122269 other upstream 159697 22952677 ~ 22981150 (+) False LOC113526422
TU122021 other upstream 1346178 21787116 ~ 21794669 (+) False zbbx
XR_003402807.2 other upstream 2043006 21026027 ~ 21097841 (+) False LOC113526807
TU120293 other upstream 4016970 19122612 ~ 19123877 (+) True G101602
XR_004578298.1 other upstream 4019721 18957428 ~ 19121126 (+) False sema4ba
trnak-cuu_22 other downstream 14291 23163107 ~ 23163179 (+) True trnak-cuu_22
XR_003402832.2 other downstream 123242 23272058 ~ 23272208 (+) True LOC113527010
XR_003402831.1 other downstream 124492 23273308 ~ 23273458 (+) True LOC113527009
XR_003402830.2 other downstream 125543 23274359 ~ 23274509 (+) True LOC113527008
TU122865 other downstream 466287 23615103 ~ 23629723 (+) True G103830

Expression Profile