RNA id: TU123377


Basic Information

Item Value
RNA id TU123377
length 3732
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G104257
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 24480365 ~ 24484096 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATTAAATGTACACTCATCAATATGAGGTTCCCAGGAGAAACTGAAAGATTAATCAGTTATCGGATTTTACGAGGCATAAAGCAAACTGCGAAGGGCAGCATacaagaagaaaattaaaaattaaaacaaatcattaaaaaaaatgaggaaattgAGCATTGTACAAAAGAGCAGAAATCAAACATCTCATGTATGacttaaaaaaatcaaccaaaattcctttttttttcactgaaaaatGGCTGATGTGtccaaagagaaagagatagagaagaaaaaaaaatccaaaataaataatccaAATTTTTACACATACGACACAGCAAGTTTTACAGCTGGACTATAGTTTAATGATTTATTCATGTGCACAGATTCAGCTAGCTGTAGATCACTTGTACTTAgcttaaaagttaaaataacaCGAAAACATCAAAAACACCTCCACCCTTGAACAAACTAAAGAATTAAGACAGCTGATGGTGTGTATAATCAGCACGCAGAGCTTCGCATGAGgccgtgagtgtgtgttgatgtagcacacacacacgtgtaagCTGGTGAGGAGAGGATGACCTGATGTTGGCGTTTAGTGAGGATGAAGAAGGCTGACGAGGATAAAGAGTAGTAATGGGGGCATTTTTACACAAGTAACAGGCTCTttcatatttctatattttgtcTATGATGAGAAATTTAGAAATGGTGCAGTttagttgcatttaaaaaagaacaccAAAATACAGTTGCAACTTTAAATTGCCTAGGATTTAACGGaaacctccaccctgaaacgcattaaatatgtttatattgtttagTGATGTGTTCAGTGATTCTGCTGTTAATCTgatggttggtgctgtattttccttattcctgtgagaagttagtgtgccgtgctgatgtcacagggagacattgttattgctagtgCACTTTAAAATGGTGTTTAATAAGAGAAAACAAATTCTCAGCACATAAGGGAGAACGTTcatgtttcactgttagctcctaaaaacaaaagagcaagagcttcttttatTAGTCACCTTTTCCCAGAGATGTTCGAGATCATACTAATGGAATATCCAATGCAGAAGTAGAGGAGATGTTGGTGCAaacgttggactcaaagttccagaatgcaatgcagctatatgacacaGTCGTGCTGAGCTACAGCAGAGACTTGCCTCGGCTAGTTggtgatctatgagatgacgaGGGCGATCTTTCTGAGCTGGATAGACTAAAGgattaaagtgctgctgcatcgaTCTTTTCAGGTAGGGATGAAGatagggctaaatcccactgcaccaatCAGCAGGCagttgaacagcattgtgggtaatgtaggaaaccatgaaaacagactgaaaaaggCAACTCcgaatttcattaaaaaataaatcttagatGCTAGGTTAGTTATaaagttgttcagggtggatttttccttgaACTGTTGTATGATAATTTTCCAGTCTAAACAGCTctctccaggtgtgtgtgtgtgtgtgtgtcggtgtgtttATCCATATTAGTTGGTTATAGAATATAAAACATAACGCCACCCTCTGGTCGAcgcataaataaatagaataaatagtTCAGGCCGTCGAGGGCGAGTTGTGGCTCctgagagatgagatgatgtTTTCCAGTTAGACCAGATTAAAGGGACAGTCGGGGTTGCGTCGTTTCACTATGCCATATTAAAGCTCATATATACAGAGTACCTACCGACAGCTAATGAGCAACTGGTCTGGATCAAACCTACTCGCTAATTTAGTTACTGTAACTGTATAAACTGCTCTAATACTAACAAAAAAGCCTCATGAAGGGTGACTAATCTCTTTACAGTGCAGGGGATGAGGAAACCAGCATAAGTACATAACCCATACATGGATCTGTTTGTTCTTGGTTTTAAAAACAGCCAACAGTCGTGTCACCTGATACACCTAAACTGAGAggtaaatagaaaaatatattatgtgTGGAAGGCGCCGTGCCTCACAAGCGCAGGCGCTGTTGTGTCTCAGTTGCATACAGACGTACAGTGTCTCGATTCGACGAAGAAGCCAGAGTTTACACACAGTGCAATGCCAAAGCATTGGAAGGGGAAAATTGAGATGAGCATCACAGTTCTAGGAGCAGTCGCTCTAATTGGTCCTGTGTtttacagtaactctgtttaACAGTAGCGGCGGTGATGCTTTAAGAAGAGATCTGTCTCCGTGTTTGATTCCTGCAGAACACCACGTGGATGACTGGAGACTGAGATGGGatgactgattatttttctacagtCACGTCTAGTCATTGAGAAGCAGTACTAATGGGGAAGATATTGTATGAAGAACAACAGAAGTACTGACTCTGTCCATACTCACTAACCACGGTGCACAGAAGGATGTCACCTGGGTAACGTAGAAACCAGCACTGTGAGAACAGGACCTGCAGTACATGATGTCATGATGTCTTAGCTTAGATATGACTGTCATTAAAGGAATGGTTCGGCAAAAATGTAGCCGATCAGCCGAAAGatatttagttttgcactggactTACACTGCAACCAAGTAATGCAAGTCTTTTTCACCcaagactctttccataaatatgCCTCAAACTGTATACTGGGAGTTTGAGAGAGCACAGTTGGTCATGCTGTCCGGGtgagagggatggcatactctctctccgtGACACTAGACGATTaagagcatctgtgagctcatgtttgcggaagagggcagatagcgctttcctcctaatgctcagctgccctgtgacagcTGGCTTCATGTCTTCACCTTCTCTTTTTGGTAGCTGTGGAGTGATggggagagctagctagtgggtgggaattggcaaaatgatcaaattgagagattaaaaaaaaacaaaacaaacaaaaaaaaaccctgcatcAAGTTCTGCAGTAAATTTAGACagaatttatgtaaaatatagaACACGATatacgtgctgttataggaagataatcaacgaCCAGGTGGCATGATGATTCTATCACTTCcccaatcactgattatttttcctattttcctaaGGTGGAGTGTCCACCTTAGGTCTGTCAGTAAGTTGTTATAAGATAAaccataatgtattagaatgagcacattaatataaaactgtcatGTGCCTttcagccagcactactgtcagagctactgttatagaaaattaatcaacaccatctgaccaattgAGAAATCAAGGTCAATCAAGGTATAAGGTCAGTATCACTACATAGTGTCACTTAcagaaatctgtaaaaataaatcaaacaatgAGGGCAGCTCACTGGAAAACCAGAATCACTGTTTTCCAGTTCAGCCACTTTGGTCTTAACTGTGTAAGCACTGACTATGTCTTCTATTTGAGAGAAAATCCTTTATCTGAACATTTACACGTGGCCTAATGACATCTGCAATGAGTATATGAAGAAGGGCATGTGtttatggaaaagattttgggtgaaatATGGAAGTGACATCCATCACTTGATTTTTACATtagtgaaaaatacaaaagcaCAACTTGTCTTGGCTGATTTACTTTCATTGAACCATTCGTTTAAGATCATCTACAATGTTTAAGCTGAGGGTCACATACTGTCTGGTTCAGGTAGCACCCCGATGTGtttataacattaaattacAATATCTTGATCTTCTTGCATTCCATGTacctgtaaatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122944 lncRNA upstream 726105 23749063 ~ 23754260 (+) True G103896
TU122937 lncRNA upstream 738050 23739688 ~ 23742315 (+) False cstf3
TU122936 lncRNA upstream 738105 23739651 ~ 23742260 (+) False cstf3
TU122932 lncRNA upstream 741612 23729878 ~ 23738753 (+) False G103889
TU123404 lncRNA downstream 80536 24564632 ~ 24571887 (+) True G104284
TU123458 lncRNA downstream 91396 24575492 ~ 24634405 (+) True G104325
TU123569 lncRNA downstream 278546 24762642 ~ 24764112 (+) True G104429
TU123667 lncRNA downstream 342670 24826766 ~ 24827147 (+) True G104509
TU123681 lncRNA downstream 451480 24935576 ~ 24935879 (+) True G104523
XM_034305318.1 mRNA upstream 12889 24462826 ~ 24467476 (+) True six9
XM_026913861.2 mRNA upstream 12889 24462831 ~ 24467476 (+) False six9
XM_026913862.2 mRNA upstream 13579 24462828 ~ 24466786 (+) False six9
XM_026914032.2 mRNA upstream 18662 24448341 ~ 24461703 (+) True six5
XM_034305054.1 mRNA upstream 53237 24394292 ~ 24427128 (+) False yap1
XM_026913981.2 mRNA downstream 98108 24582204 ~ 24627029 (+) True map3k10
XM_034305013.1 mRNA downstream 507686 24991782 ~ 25011741 (+) True b3gat1a
XM_026913405.2 mRNA downstream 507686 24991782 ~ 25011741 (+) False b3gat1a
XM_026913987.2 mRNA downstream 551417 25035513 ~ 25038677 (+) True exosc5
XM_026913986.2 mRNA downstream 551421 25035517 ~ 25040089 (+) False exosc5
TU122935 other upstream 738050 23739502 ~ 23742315 (+) False cstf3
TU122865 other upstream 850642 23615103 ~ 23629723 (+) True G103830
XR_003402830.2 other upstream 1205856 23274359 ~ 23274509 (+) True LOC113527008
XR_003402831.1 other upstream 1206907 23273308 ~ 23273458 (+) True LOC113527009
XR_003402832.2 other upstream 1208157 23272058 ~ 23272208 (+) True LOC113527010
TU123976 other downstream 810803 25294899 ~ 25306811 (+) True G104781
TU123982 other downstream 810803 25294899 ~ 25315213 (+) False G104781
TU124829 other downstream 2346882 26830978 ~ 26833427 (+) True G105569
TU125244 other downstream 2727293 27211389 ~ 27214570 (+) True G105898
trnal-caa_8 other downstream 3074740 27558836 ~ 27558946 (+) True trnal-caa_8