RNA id: TU123680


Basic Information

Item Value
RNA id TU123680
length 4928
lncRNA type sense_over
GC content 0.35
exon number 2
gene id G104522
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 25013112 ~ 25108966 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTTTACTGACATAAACTGCAAAAATAATATCGAGaggaaatatcttgaatatatgAACCAGAATCATGAAGCATCTGATTTAACTCCTTTCCAGAAGAAAATaattgaaagaagaaaaatccgCCAACAGAACAAGACAAATTTATGCTTGAAATTAGTACAGATCATAATCACGTGAGAAATATTCAATAAGTTCACCTATGTTCAAGATGTTTTCACTGGCTAAGATATCTTTTTCGTTGTAAAAGTAGAGCTCTGTACTGCAATGAAAAAATAACATCcaagcaagtgaaaatatattgaatatagtcaaattccCTATTATgtgattacaataaaccaagtgtaagattattaaatctattacTAGACATTTTTTACTAACATCAAGCTTAAAATACTGTAGTCTTTTTCagttggcagataattttattcattttaagcatttatttctagaaagaagcaaaattgtctgccaatagaataagaaaatttgaaGGTTGAAATTAGTCCAAATGTCAAGAAGTAAGTGTGAAAGCTTATTTATGAGATTTTTATGAGATATTATCTCTTTACCCGTCTTGTGTTAAGTGTTACAATCTAATTAACGTGCACATTTCCAGAAAGAGTAGTTATTCGAGACAGGAAGCAGGTAGCCCCTACAATAATAAAGTTAGAAAAGAGAACAGTAAATAAATTGCTAATGTTGTGAAAGAACTGCTGTATTCACTATTTATATTAGGAATAAAATtactgctcttatagaaaattaatcaacaacacaAATCAAAGTTACTGTTCTATCACCCTGAATagatgattattttacaataacatgctGAGGTGTTTTCCTTTtacaccatagcaatttgccaactattaacaatttttattttttaatcatacttttattgatttatagttacagttaatattGTGGAACTTCCACAAGACAAGTTCCTGGTATAACTTTGATTAGAGTAGCTATAAAAagtcgttccctcgccagcctcttttttcctctctcttgaagttaataaaacaaaaatgttaccGAGAAACATTTGCAGCCGGagctacagtcagagctgctgttagaaaatgatcagaaatcAGCATCAAAAATTCCACAGTGCTGCGGTATAGCACACTTATTAGCTATTAACGTCTAATCCCTAGTCTATATGACTCCCTAGACTGAAATTGAAttctttcattaaatttgtCCTCACGAATACAGAGAACATCTTTAGTCGTTATTTATAAGACACGTCTCTACTTATAGTGTCTTTATGTAATTCTTACAAAACTCCTCCATCCTTCTGAATTTCAAAAGACTCTTGAGCTCGCAGTGAAAGCGTTTGACTAATGAATGACAGAAATGAGGAAAACACGAACAAAAGCACGAGCAGCCTGAGCAGGTGTCTGAAACGACCTCGGCCTCGTCTCATCTCAGCTTCTTCATGTCCACAGCCATCCTGCTGCATGATTATACACTTCTCTTCATCAAGTTGGAAAGAAGTTGAGAAGCTTGTAACGTTTCCTCTGCTTTTTTCCAAGACACTTGACGCACCATTAATTTGATTCTACATGCTAATGATAATTATCTACACTTCCTTTGTTTTCTCCGAAGCTTTCACCGCTTCAGAGTGCTTTGCAAAAATGATTTCCAGCAGGtcccaatgttttttttttttttatcgctGCATGGTCTGCTTATTATCACCCGCCTGCTTACACTTCATTAGCACGTAAATATTTGGTGCAACTTTTCATCCCAGATTCTTAGAAGCCACGTTGATTTTGAGTCGTAATCAAACTGAAAGTGTGTAGAAACGTGCTAAGAATTGCATCAGTAGTTGTTACTTTAGTACAAAAAAACGTGTCCATAGCAGGCTCCTTTTGTTTAACCTCACAGATTTGTTTGAAATAGCAGACGAAGTGTTTAAAACTGGATTTTGTAATTaagatttattatttagattGAGACCCTGCACCCACCTGATTTCATTCCCTACACTGTAAAAAggattttgtttgtatttatattattattgatctatttatttattgtatttattttacactctaATGTCCTGACTAAAGTGTTGACATATCAGCTCAGATGAATTAATCTTATCCCTctgaaaatatgaataaaaacttTTATCTGAGATGAAACTGAGATCAGTCGTTGTGTAAGGAAAGAGATCACGAGGATCAGTTTCTTTATAGTCCTGTAGCATTTCTCTTTAGCTGCCAGGTGTGTTAAGAACATTTATTTCCACCACCTCTTGCCTTGATGTTTTCCACCTTCTCTGCGTTTGTAATATAAACTCATAAGCCATGATAATATTCTTGCATTACTTGAAGAAAATATGTTCGGTGTGATCACTGATATTCCATAGAATTGCACAGTATAACAACATCTCACAAAGGCAGAGTATTTATGCTGGTCTTACTGTTTGcattgccacacacacacacacacacacacacacacacacacacacacacacacactccctaaaCACTAAAGCagacactcatcacactaaatactatattaatatcacacacaaTTACCAGAATTTAATGATTTGAAAAGGGAATCTACATTCATTCATGTAAAGTGATACCAAAGCATTCCTACGTATGAATGGTGACATTAAAAAATGCATCCTAAGCAAAATACTGTACAGGATTAATGTTCACTTAGAAGtggtaaacatttcataatGACTAAAATAACATACAACAGAGAAAAGCCTGTATACTAAATTGCCAGTTTTTAGTTACGAGAGTGGTAAATCTAATAGACCTAAATCTAATCTAACTCAGTGTATCTCAAATGTGTGATGCTAATACACaactaatctctctctctctctctctctctctgtgtctgtctcacacacagacacacacacgcaggcacGCGCAccgacccacacacacacagacacacacacacacaaacaagaaaaTCAATAATCACATCCAAAATCAATACTGAGatgataaattaatgaatttctAGCCAATCTGAGAGATGACAAGCATTTAATTCGATGTGATCTCACGCTGATCATGTACATTCACTTGGGAGAGAATCTAATCTAAATATAGCAGCTAAAAGGTTAAAGGTTTTGTTTAAGGGCTCTGGTATTTGAACATAAAACCTTCAGGTAACTAGCATTTCAGCCACTGAGCCTGTCATTTataaagaaaacttcacattcaaacacaattaaacctttgtatgtgtgtggtggtctgggaaaacctgtcagatgaTGCTgcggctgaattctggcaaccAGCCACAAAAGACAATCAAACAGtagaaagtagcctaaataaaaacattttatatatatttaaccaaaacaatgtggaaatgttttttttttttaaatttaggcTACTTTTTAACCTTGACTTGgctatcttcctgcaaagatcacgtATGActagccagtttaacaaacgtAGTGGTAAACACAGTTATTCTGCCTAGAGATgactaaaaccttgctagctaagtatgatttcctcacacagtgaatgtcaggctttgTTTAAGTTATTAAATAGCTATGCGCCATAGAGAAATGGATACAAgtctaattaatttattttgtaataagaTACTGGCTGTCAAATTGTCCGCAATGCTCCTGCACCGTcgcatcatcatcaaaacagagaagagcacttataCACGCTGttctaaaaatgtgaaaatgacctaataaaagacattaataacaagaaatttacaGAACAGATgtgactgaattaatcagcgaTGATTTCATCAATGATGTTAGTGTGAACAGTGATCAGACGAGCGAAGAGACTAAGATGAGGTCTGTGTTTAAATGCCGTGAGTGaattttacctcaggtgatgagacacacactgatgctgataatcaaagtaaGAACTCATTTCCCCGTGTAAACTTAGAAGTCTTTcaaatttggcagtaatgttgtttttccataagtatactaggttataaatgtagacgtggaattgaaatgaaatgcaattttctcccttttcacttttatcTTCACTAAGTATCTAGACTTTTAAAATGCTAGGACTTCTGGACATCCCCTGTAGTTTTCATAACTACATATAGCAAAAAGtgtcaaaatttgaccatgtaAAGGGTTTGCCCAGGTCTGCGCACATATTTTATAGGGGGTTTGGGATTAAATGCAGCCAAATCAATATCAATACTTTTAACTGGTGTCTTATTAGCGTACATTGATCACTGAACCATGTGACTTTGGAGGTCACAATCCTTTTATAAATGAAAGTTAAAGTAGCTCTAAAAACCACAAATGAACAAGTTAGAGTCCTCGACTAGAAACTCCCTACAATCAGAATCTGTGTAAAGTATTTATAGTAGAACAGGTAACATTTCATGACATGTTGAGGGCTTGGAAGTAACATTTGCCAAGCAACTAAAGCAAACTTTGACTACAATTTGGCAATGTATTCAACCTGTTAGAAGATTTAGATATGATTTTGAtactagatttttttaaagaacttttTAATTGTCTAAAATGTGACTTATGCACCTCTACTACCAAGCCCTTGATATTATAACTTACACAATCAAGAAAATACTATGACtataagcaaaaaaaaccaaaaaaacatcatggatGCATTGTAGTGATTCTGTAGTGTTGTACAGGAGCTTGGCCTGTAGAGGACCTCTAGCACAGTGATTTTGGCCGCACCTTTGGAAAAAGCTGTAACGGGAAGAAATACGAGGTCAGACATTAGGCACAAACCTCAACAAGACAACAagacaagaacaagaaaaaaaactacacaccTAAAGATATAAAGGATGCATCGATACCAATCCTGGTATCAGGTATTGGTCCGATGTAATGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123678 lncRNA upstream 333 25011916 ~ 25012779 (+) True G104520
TU123681 lncRNA upstream 77233 24935576 ~ 24935879 (+) True G104523
TU123667 lncRNA upstream 185965 24826766 ~ 24827147 (+) True G104509
TU123569 lncRNA upstream 249000 24762642 ~ 24764112 (+) True G104429
TU123458 lncRNA upstream 378707 24575492 ~ 24634405 (+) True G104325
TU123920 lncRNA downstream 124677 25233643 ~ 25239456 (+) False LOC113526839
TU123921 lncRNA downstream 133834 25242800 ~ 25243305 (+) True G104739
TU123930 lncRNA downstream 134515 25243481 ~ 25243878 (+) True G104748
TU123938 lncRNA downstream 136698 25245664 ~ 25245865 (+) True G104751
TU123977 lncRNA downstream 185933 25294899 ~ 25304404 (+) False G104781
XM_034305013.1 mRNA upstream 1371 24991782 ~ 25011741 (+) True b3gat1a
XM_026913405.2 mRNA upstream 1371 24991782 ~ 25011741 (+) False b3gat1a
XM_026913981.2 mRNA upstream 386083 24582204 ~ 24627029 (+) True map3k10
XM_026913861.2 mRNA upstream 545636 24462831 ~ 24467476 (+) False six9
XM_026913862.2 mRNA upstream 546326 24462828 ~ 24466786 (+) False six9
XM_034305166.1 mRNA downstream 28048 25137014 ~ 25139561 (+) True opa3
XM_026913562.2 mRNA downstream 31186 25140152 ~ 25155099 (+) True hnrnpul1
XM_026914236.2 mRNA downstream 124659 25233625 ~ 25240213 (+) True LOC113526839
XM_026914077.2 mRNA downstream 141376 25250342 ~ 25266857 (+) True si:ch211-136a13.1
XM_026914471.2 mRNA downstream 159927 25268893 ~ 25282220 (+) True yif1b
TU122935 other upstream 1270797 23739502 ~ 23742315 (+) False cstf3
TU122865 other upstream 1383389 23615103 ~ 23629723 (+) True G103830
XR_003402830.2 other upstream 1738603 23274359 ~ 23274509 (+) True LOC113527008
XR_003402831.1 other upstream 1739654 23273308 ~ 23273458 (+) True LOC113527009
XR_003402832.2 other upstream 1740904 23272058 ~ 23272208 (+) True LOC113527010
TU123976 other downstream 185933 25294899 ~ 25306811 (+) True G104781
TU123982 other downstream 185933 25294899 ~ 25315213 (+) False G104781
TU124829 other downstream 1722012 26830978 ~ 26833427 (+) True G105569
TU125244 other downstream 2102423 27211389 ~ 27214570 (+) True G105898
trnal-caa_8 other downstream 2449870 27558836 ~ 27558946 (+) True trnal-caa_8

Expression Profile