RNA id: TU123938


Basic Information

Item Value
RNA id TU123938
length 202
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G104751
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 25245664 ~ 25245865 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCAAGTTTCCCAGAAGGTATGTGCATAATGAGTCACTAGGTTTACTGTATTTCCTCTCACAAATAACCCTGAACAATCTCTTCTCTCCACATGGCTATAATAAGTACAACACAATGGAAGTTTTTGACCAGTGGTTCAAGCTCATTTATTCCCACGTTTACAGTTTGAGTAGAAGTTAATTATACTATtgtgcagtggtgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123930 lncRNA upstream 1786 25243481 ~ 25243878 (+) True G104748
TU123921 lncRNA upstream 2359 25242800 ~ 25243305 (+) True G104739
TU123920 lncRNA upstream 6208 25233643 ~ 25239456 (+) False LOC113526839
TU123680 lncRNA upstream 136698 25013112 ~ 25108966 (+) True G104522
TU123714 lncRNA upstream 184364 25057875 ~ 25061300 (+) True G104554
TU123977 lncRNA downstream 49034 25294899 ~ 25304404 (+) False G104781
TU123980 lncRNA downstream 49034 25294899 ~ 25304404 (+) False G104781
XR_004578347.1 lncRNA downstream 94758 25340623 ~ 25342308 (+) True LOC117597584
TU124338 lncRNA downstream 657961 25903826 ~ 25905288 (+) True G105118
TU124552 lncRNA downstream 1074144 26320009 ~ 26323500 (+) True G105320
XM_026914236.2 mRNA upstream 5451 25233625 ~ 25240213 (+) True LOC113526839
XM_026913562.2 mRNA upstream 90565 25140152 ~ 25155099 (+) True hnrnpul1
XM_034305166.1 mRNA upstream 106103 25137014 ~ 25139561 (+) True opa3
XM_026913986.2 mRNA upstream 205575 25035517 ~ 25040089 (+) False exosc5
XM_026913987.2 mRNA upstream 206987 25035513 ~ 25038677 (+) True exosc5
XM_026914077.2 mRNA downstream 4477 25250342 ~ 25266857 (+) True si:ch211-136a13.1
XM_026914471.2 mRNA downstream 23028 25268893 ~ 25282220 (+) True yif1b
XM_034305489.1 mRNA downstream 23028 25268893 ~ 25281629 (+) False yif1b
XM_026914476.2 mRNA downstream 23028 25268893 ~ 25281629 (+) False yif1b
XM_034305490.1 mRNA downstream 23028 25268893 ~ 25281629 (+) False yif1b
TU122935 other upstream 1503349 23739502 ~ 23742315 (+) False cstf3
TU122865 other upstream 1615941 23615103 ~ 23629723 (+) True G103830
XR_003402830.2 other upstream 1971155 23274359 ~ 23274509 (+) True LOC113527008
XR_003402831.1 other upstream 1972206 23273308 ~ 23273458 (+) True LOC113527009
XR_003402832.2 other upstream 1973456 23272058 ~ 23272208 (+) True LOC113527010
TU123976 other downstream 49034 25294899 ~ 25306811 (+) True G104781
TU123982 other downstream 49034 25294899 ~ 25315213 (+) False G104781
TU124829 other downstream 1585113 26830978 ~ 26833427 (+) True G105569
TU125244 other downstream 1965524 27211389 ~ 27214570 (+) True G105898
trnal-caa_8 other downstream 2312971 27558836 ~ 27558946 (+) True trnal-caa_8

Expression Profile