RNA id: TU123977


Basic Information

Item Value
RNA id TU123977
length 1937
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G104781
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 25294899 ~ 25315213 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacaccttcagaggtcttgtggagtccacgcCTTGATGggacagagctgttttggtggtacatgggggacctacacaatattagacagtcggttttaatgttatggctgattggtgtatattgtctgtatttattgaCTTTGCACTGTCTGTGCAAAATGTCTGTGGTCTTCTGTGAACTCACTCACAAAAAAGCACTAATATTTTCAATGTCAGCTCCCTTCTGCTCCCTCCATGATTTAAACAGACCATGACAGGACAAAAACTGACCAGATAGTCACACAAATAATATGTGGTCAGCCAATAAATGTGCcaataaatgtggaaaaagctGGGTGTGCCTAATAAACTGGCTATTATGTTTATGTACTGTTACCTAATCATACATTGTTCTCCATTGCTAAATAGTTGctgaaatcttttctttttaatcctCCCACCATTCAGTGACAGAATTTCTGTTAGACATTGAATTAGCATATAGCATATTAATGGTTTACACTTCACAGGAAGTTGTGCACATATCACATTTTACACATAGGTATCATGGGATTCAATAATACTGCAGATTGAACAGAGTTTCAGAGTTTAATTGTCTATTACAACTGAGGTTGCAGTAATCAgtcaaatgaaataattaaaaagatatttaaaagaTCTGACGTAGCCCAAATGGAAAATACATACAATATTCTGTATATACAAATACTGTTGAtaattgctctctctctctctttctctctctctctcacacacacacatacacacacaaaacatcttattcaggaaaagaaaaagtccaGCACTCTACTGACAGCAGGGCggatgaggcattattaaataGTATACTTCATCTGTGTTCAAAAAAATAGAGAATGCGTTGAGATAAATTGTTGTCATTAATAGTTATTTTCCAcaaatagatttaataaatatatactctGACTTAGAATTACATTTTAGTTAAATACtataaaaatctcatttttgGCTGATCAGCTCTTTCAGGGTATGTCAGAACAATATAATCCAATGACAATTTAGGGAAGACAAAGGGTATGTTGTCTGCATTGCTTTTGGTGTTGCACCAATGATGAGTTAAAAACACTGCAGGAATGTACATTGTACATAGAGTTATGGCAATCTGACAAATGGCATTTACACTGAAGTGTGGTAAGTGTCAGAGTCATCTGAGTTCAACCTGACCCATATCACACTATGGAACACCATATTCTACCTTACAGAGACCATATGTGAGTCATGACATCAACCAGAACTTACAGTgtggggaaataagtattcagacacttttgtttttgatatttaaCTTACTTCCTGTgaatatatttactttaaatttacacacaaatgtCTTTTGACACATAATTTCCACATAATATCCTAGCCAATGTGCTGACTTtaaaaatcctccataaatctTCAATGGGATTTAAGTCAGTGCATTTCTTAGGCCTTGTaaggccttcttgagttatgctgccttcacgtgctatcggaattattgtaaatatgagTATCCCACTAGGAAGTTGCACATGAATGACCCCTCAAGTCGGAATTACGACTGGGAAACTCTGAGATAATTTTGACACCCAAGGCTCCAAGATGGGAGGATTCCTACACTTTCAACATGGTGGAGGAGAGTACAGTTTCTGTACTGacaggttttgttcatttttcttttagtcATATTCATTTATGTGCTATATCAGCAACCATTCTATGCATGTTGTACATTATTACACCATGAAAATTTTGACCAAATGGAATTTGACCAAAATTCCATTATGGTCATCAAGCTACCTAGCTGAGTAATATGTGttatggtgtaaaaaaaaaagaaaaaaggaaaaagaaatatgtatgaacCTGGCGTCAggcatgtttcatgttctttccgACAACAAAGCATGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123938 lncRNA upstream 49034 25245664 ~ 25245865 (+) True G104751
TU123930 lncRNA upstream 51021 25243481 ~ 25243878 (+) True G104748
TU123921 lncRNA upstream 51594 25242800 ~ 25243305 (+) True G104739
TU123920 lncRNA upstream 55443 25233643 ~ 25239456 (+) False LOC113526839
TU123680 lncRNA upstream 185933 25013112 ~ 25108966 (+) True G104522
XR_004578347.1 lncRNA downstream 36219 25340623 ~ 25342308 (+) True LOC117597584
TU124338 lncRNA downstream 599422 25903826 ~ 25905288 (+) True G105118
TU124552 lncRNA downstream 1015605 26320009 ~ 26323500 (+) True G105320
TU124687 lncRNA downstream 1209032 26513436 ~ 26516780 (+) True G105446
TU124691 lncRNA downstream 1221516 26525920 ~ 26527807 (+) True G105450
XM_026914471.2 mRNA upstream 12679 25268893 ~ 25282220 (+) True yif1b
XM_034305489.1 mRNA upstream 13270 25268893 ~ 25281629 (+) False yif1b
XM_026914476.2 mRNA upstream 13270 25268893 ~ 25281629 (+) False yif1b
XM_034305490.1 mRNA upstream 13270 25268893 ~ 25281629 (+) False yif1b
XM_026914473.2 mRNA upstream 13270 25268893 ~ 25281629 (+) False yif1b
XM_026914414.2 mRNA downstream 463014 25767418 ~ 25777506 (+) True dusp8b
XM_034305191.1 mRNA downstream 484234 25788638 ~ 25839289 (+) True mob2b
XM_026913866.2 mRNA downstream 484234 25788638 ~ 25839289 (+) False mob2b
XM_026913867.2 mRNA downstream 484234 25788638 ~ 25839289 (+) False mob2b
XM_026913863.2 mRNA downstream 511437 25815841 ~ 25839289 (+) False mob2b
TU122935 other upstream 1552584 23739502 ~ 23742315 (+) False cstf3
TU122865 other upstream 1665176 23615103 ~ 23629723 (+) True G103830
XR_003402830.2 other upstream 2020390 23274359 ~ 23274509 (+) True LOC113527008
XR_003402831.1 other upstream 2021441 23273308 ~ 23273458 (+) True LOC113527009
XR_003402832.2 other upstream 2022691 23272058 ~ 23272208 (+) True LOC113527010
TU124829 other downstream 1526574 26830978 ~ 26833427 (+) True G105569
TU125244 other downstream 1906985 27211389 ~ 27214570 (+) True G105898
trnal-caa_8 other downstream 2254432 27558836 ~ 27558946 (+) True trnal-caa_8
trnal-caa_9 other downstream 2255983 27560387 ~ 27560497 (+) True trnal-caa_9
XR_003402810.2 other downstream 2640386 27944790 ~ 27966308 (+) True LOC113526832

Expression Profile