RNA id: TU124687


Basic Information

Item Value
RNA id TU124687
length 3321
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G105446
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 26513436 ~ 26516780 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAAGGTCAAAATTACACGatggaaaacaaaaagcaaaataaaaccaatGCATGCTAACAGTGCATAACCCCCTCATTCCCCAACATAAACCAATCAGAACTGCTCAGAGTGTTTAAGCGAAGGTTCAAATCACTACACGACTTACACTTAACAAAAGGTAAATCAATCTCTCTGGGCGTTTGTATACCTTTCTCCATATATTCATAATGAGATATCAGGGTTACACTCAGCCATTATGGTTAAATAACATgttgctgtaataaaatgccCTGTTCACACTACTGTGTGATTCCCacgtgaacttttttttaaatgttggaCTGCACAGATGTAGCTCAGGCTGTGGTAGCAcagttaaacatgtttttgaagCAAACAAAAGGGTTACaggagtttttaaaaaaaaaaaaaaaaacaggtcagcTCCACCAAAAATCCAGCAGCTTGAGTTGTATTgaggttttattattttcccatcACCTGCTGCTCTCGATCTCACCGACACACCCAGCGAACAGGAGCAAACATGTCTGAGAGACTGTGGCGAGACGTTACAATCCAATCCACCATTCAACTAAAAACACTGTGTACAGCCACAAAACGTTCGCTTGCTAAACACAGCCTAGGTATCTGCTTTTCCCAAGATCCTTCACAACGCGAGTGTCAAACTGACTCAGTGGATACGAGTGTGTGAGGTGAACTTCTGCATGCTTACAATAAAACCACTAGAGTGCTGGGAGAGAATCAGATTTAAAATAGGAAACAAAGCCTATTATTATAGGATGGGATGAAAGATCTTCAGCTACTACATCAAGTAAACAGTCGTCACTCTCCCAGATATTAAAAATCATGCAAGACATAaaagaaaactccaccctgaaacacattaaacatggtTAGATTAAAAGACGTAAAGATTCAGGTGCTCGTATTGTTGTTATTCCTGTCAGTGGTTGTCTGCTGTGCTGATGTCATTGCTAGTTGAGttacaaatgagaaaaaaattcaacaatctcaaacatatgACAGGATGTTGGTCAGGTTTTGCTATTAGCtccttaaaacaaaaacagtccaTTTTcttactcaccattttccagcgaaGTTCaaagtcatattaatgagaaactCAGTGTAGAAATAGTGGAGACGTTGGTGCACATGTTGGACACGAAggtccagaatgcaatgcagctatatgctGAGACTCGGCTCGAATAATTACTGATCTGCGAAATGACGGTAATCATGGCTTTCAAAGCTGAAGCTCTGGaatctgatctgtttgagcagagtgtactgATGCGGAGGTGagacagctggacagactaaaagactaaagcgctgctgcatcgctctcttaaGGTAGAGATGAATCGAGGGCTAAATCCCTccggcaccactatcagcaggcagTCGAATGGAATTGTGGGTCGGAAATTGTTAACCAAGGTGAATACAGTCCGACATGTCAATGAAAGATGattaaacttaaaataaatcttggacacctTTGAAGATCATATGTTCTTTATAAAgccattcagggtggattttcccTTAAATACAGGCTAATGCCTTAAGGTTTGGtataaataaacactacacCTTCGCTATTTCACCATGCCGCAGAGATCATTAATATCACATCCCCTTCCTGACCTAGCCTCCTTAAGCCACCTTAAATAACAACAGGAAATGAGCCATGCCTTGGTTTAAATTAGATAAGCCACCGATCAACAGTAACAATGAGCTATTTAATGGTGCAAATGAAACCAAAAccaaatctaataataataataataatgaggaaGGCATTTAAATGGAGAAGGGGGTAAAAATGTCCAGGTGGATCACATGGTGATTTCTGGTAAGGAGAGATGTGAGTCTTAAGTAATGTCCCTCAAAACACGTTTGCAGGATGTGTAAAAGGAGTACTGACGCAACAAGACGGCAAAATTTCGCCCAAAAGAAATGGACAGGTCCCACCCCCATCACCTGACGAAGACTTGGGTTATGAACCAATTGATTGTATGTAGATTAGGAAGCTGAAGATTTGAGGGAAGTCGTAAAATAGGTACATCTGCAGTGTGGACAGTGACATtaaaaagggatttttttttttttaaggcaataATGGTCATGTTACAGATTTCCCCCCCACAGGAATGGAACAGGGCATCATAAATAAGCTTTACAAAAAcaattttgatcattttgtgGCTTTCCTTAATAAATTTTGTATAATCTCACTGACTGCTTAATACTTCAACCTTGCTATGTGCCCGAGTtgacaggaaacaaaaaaaaggttttacatAACAGCGGTGATGTAATAAACACAGCAGGAATCACACTGGTTAAAGAGGAATGGTCACAATTGCAGTTAATGACAGCGTAAGCCACACATCACTTCCATTCTCAcaaggggaagaaaaaaagaaaaaaaaaaaaaaaaaaaaaaaaacagcagtagtCATAATGTGTACATAAAACATGTTTAAGATATTCCTTTTGTCAACATGAGGATATCCATTAAGTAATTTATCCTTATTCTATTTGCAAGATAAATCTTCAGATGGACGTTCCGCGCTATGCAGGCATGTTTTTAAGCGATCCAGTCCTGTCTGAAATGCAAAAGTTCTCTCTGCGATACATCTTTATAAGTTTACTTACAGGCGGAAATCATTTCGATGACTTTACAGTGAACTAGTCCAACGTGCCTggtcagattttcagtgtgaccAGGAAAAAGCTCCAAAGAGAACAAGAGGATGGAGTGGTGATGGCATTTAACCTCCATCTCTaagaaacaacaaagaaaaaaaaaaacaaacaaaaaaaaccaaaacaatgtgGGTTCTTCATTACAAGTGTTGATCACTTAAGTCTCCTCCGCCCAAACCTAGTCTCtccccttttctttttctccataaTGTTCACGTTTTAAGTCTTCGAGAAATAAGGGAGGCTCGGGTAAGCGCTGATATCCAAAAGCCTGTTATTGTGTAGGAACCTTGGCATTTATGCAGGACTTATGACTCCGATCACAGGACGTCCATCCATGAAGCGAGAGGTCACGGGAATCACTCTAGAAATCTGCCGTATTAAATTCCGCTCTGCCAACCAAACAGCCAAAGAGAAAGCAGGAAGAACGGAGAACTAGTGGGAGGGAATGAGCAGTGACGCATAGTACAGAGAACATGGTAGAGGAATATGTTTTACCCGTTAACTCTCCAAGCCCACTCAGTTCAGAAGTCTATAATCCAGACATGGTGAATCTCCAACTAGCAAGACGATGAGAGGCGGTTgagagggga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124552 lncRNA upstream 189936 26320009 ~ 26323500 (+) True G105320
TU124338 lncRNA upstream 608148 25903826 ~ 25905288 (+) True G105118
XR_004578347.1 lncRNA upstream 1171128 25340623 ~ 25342308 (+) True LOC117597584
TU123977 lncRNA upstream 1209032 25294899 ~ 25304404 (+) False G104781
TU123980 lncRNA upstream 1209032 25294899 ~ 25304404 (+) False G104781
TU124691 lncRNA downstream 9140 26525920 ~ 26527807 (+) True G105450
TU124690 lncRNA downstream 14555 26531335 ~ 26532088 (+) True G105449
TU124727 lncRNA downstream 94161 26610941 ~ 26611260 (+) True G105479
TU124739 lncRNA downstream 174654 26691434 ~ 26691677 (+) True G105490
TU124808 lncRNA downstream 181198 26697978 ~ 26698178 (+) True G105548
XM_026914049.2 mRNA upstream 201934 26303120 ~ 26311502 (+) False ubl7b
XM_026914047.2 mRNA upstream 201934 26303145 ~ 26311502 (+) False ubl7b
XM_034305023.1 mRNA upstream 201934 26303332 ~ 26311502 (+) True ubl7b
XM_026913489.2 mRNA upstream 430163 26009102 ~ 26083273 (+) True insyn1
XM_026913603.2 mRNA downstream 37688 26554468 ~ 26565211 (+) True chrnb4
XM_026913602.2 mRNA downstream 51815 26568595 ~ 26578544 (+) True chrna3
XM_026914348.2 mRNA downstream 98042 26614822 ~ 26622142 (+) True LOC113526907
XM_026914349.2 mRNA downstream 98042 26614822 ~ 26622142 (+) False LOC113526907
XM_034305274.1 mRNA downstream 98042 26614822 ~ 26622142 (+) False LOC113526907
TU123982 other upstream 1198223 25294899 ~ 25315213 (+) False G104781
TU123976 other upstream 1206625 25294899 ~ 25306811 (+) True G104781
TU122935 other upstream 2771121 23739502 ~ 23742315 (+) False cstf3
TU122865 other upstream 2883713 23615103 ~ 23629723 (+) True G103830
XR_003402830.2 other upstream 3238927 23274359 ~ 23274509 (+) True LOC113527008
TU124829 other downstream 314198 26830978 ~ 26833427 (+) True G105569
TU125244 other downstream 694609 27211389 ~ 27214570 (+) True G105898
trnal-caa_8 other downstream 1042056 27558836 ~ 27558946 (+) True trnal-caa_8
trnal-caa_9 other downstream 1043607 27560387 ~ 27560497 (+) True trnal-caa_9
XR_003402810.2 other downstream 1428010 27944790 ~ 27966308 (+) True LOC113526832

Expression Profile