RNA id: TU124999


Basic Information

Item Value
RNA id TU124999
length 1333
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G105732
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 27064691 ~ 27066023 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCTTTTCTTTCAAATTTATTACACGTGGAAACACCTATGAATTGTTCATAAATTCTTTGTGAATCTGGTTGTAAAACTACCAAAACAGTGTCAACAGTTTTCTGACCGATTTAGCttgtaacatttacaaattttggATAAGAACAACACTTCCGAATACTTCTGAAATATAGAATgatacctttatttatttatgtaatttatttatttatttatttttgtcaaggGTAGGCTCAGTGGTTTACAGTGGCCAGACAATCTGCACGGAATAGTGGAGTAGGCAGGGAATCATGGATGTCaaaaaacgaacaaacaaacctGACCTCTGATCTTTAATGCCAGCATATCAGACCTCACTTTTAATCCTTTAAATCCTCTTTAGGAATTCCCAAAGGACCAAAATTGTGCAATTCAAATCTGCTGCCTCCCCTTGCCAAATGAAATTTGTCCTTCCTGCCTGCTTCCACTGGACTGAATGCAAGAATTTGGTTTTGTTTAACTGTGACCTCCTGCCTGTCCTGTTCTAAAGCCCAGAAGTTCTTATTAGTTCAAATGTATGATAGGAATTGTGTCTAGAGATTGTAAACACCCGGTCAAGCTTCGCAAAATTGACAAAAGTAGCACAAATATCAAGATGTCAGATGCTCTACACACTAGAAGTTAAGATAGTTTTGGAAAACCGAGAACTGACTAGCAGATAATGTAATATGttctttgctgttttaaaattttctaaacgactttttttttttttttttattaatttccttTTACTGTCGGTTACCATACATGCTTATATTTCTTTGTTCAATTCAGCCACGAAGATCTGCTGTATCCTATCCCTACTACATACAATCTGAACAATTTGCACTAGTTATCACCTCACTATCTGCCAATGATTTTATTCCATTGTACTAGAAAATATTGTCTGAATAATACACATcaaaaatgcttaaaatcatCCTCAGTTAATCATCCTggaattattcattattatccGAGTCTTTAAACCTCTTAGTGTAGGATTGGAAAACTTTCTTTTACTGAGAAAGAAACTGGATGCAGATTTTACAGAAGTGCCAAACTGTTTTATCTGAAAGGTtgatttcagttttcttttcttttctttcttttcttttttttttttgttccagagCTACATACATTTGGCGAATGCCCTCTATCATTATTGTTATCTCAGCACTTAACTTCACCTCTACCTTTTTATCTACAGACATTCATTTCACAAAAAGACCCATTCATTCAGGTTGTTGTGGCTTTTTTGTTGCAGCTGTAAATGTAGGACATCTGGGAAGCACATGTATTATTAAG

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125000 lncRNA upstream 829 27063355 ~ 27063862 (+) True G105733
TU124808 lncRNA upstream 366513 26697978 ~ 26698178 (+) True G105548
TU124739 lncRNA upstream 373014 26691434 ~ 26691677 (+) True G105490
TU124727 lncRNA upstream 453431 26610941 ~ 26611260 (+) True G105479
TU124690 lncRNA upstream 532603 26531335 ~ 26532088 (+) True G105449
TU125117 lncRNA downstream 63325 27129348 ~ 27129629 (+) True G105841
TU125136 lncRNA downstream 75822 27141845 ~ 27145031 (+) True G105855
TU125251 lncRNA downstream 163761 27229784 ~ 27234224 (+) True G105904
TU125340 lncRNA downstream 432408 27498431 ~ 27498630 (+) True G105981
TU125360 lncRNA downstream 477036 27543059 ~ 27545517 (+) False ddx11
XM_034304947.1 mRNA upstream 1630 26913328 ~ 27063061 (+) False si:dkey-205h23.2
XM_026914232.2 mRNA downstream 39443 27105466 ~ 27107571 (+) True LOC113526836
XM_026913265.2 mRNA downstream 54162 27120185 ~ 27128413 (+) True LOC113526324
XM_026914193.2 mRNA downstream 460100 27526123 ~ 27545526 (+) True ddx11
XM_026914194.2 mRNA downstream 460100 27526123 ~ 27545526 (+) False ddx11
XM_034304962.1 mRNA downstream 492417 27558440 ~ 27600569 (+) False iqsec3b
TU124829 other upstream 231264 26830978 ~ 26833427 (+) True G105569
TU123982 other upstream 1749478 25294899 ~ 25315213 (+) False G104781
TU123976 other upstream 1757880 25294899 ~ 25306811 (+) True G104781
TU122935 other upstream 3322376 23739502 ~ 23742315 (+) False cstf3
TU122865 other upstream 3434968 23615103 ~ 23629723 (+) True G103830
TU125244 other downstream 145366 27211389 ~ 27214570 (+) True G105898
trnal-caa_8 other downstream 492813 27558836 ~ 27558946 (+) True trnal-caa_8
trnal-caa_9 other downstream 494364 27560387 ~ 27560497 (+) True trnal-caa_9
XR_003402810.2 other downstream 878767 27944790 ~ 27966308 (+) True LOC113526832
TU125656 other downstream 893502 27959525 ~ 27961771 (+) False LOC113526832

Expression Profile