Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU125360 |
| length | 500 |
| lncRNA type | sense_over |
| GC content | 0.46 |
| exon number | 3 |
| gene id | ddx11 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047600.1 |
| NCBI id | CM018546.1 |
| chromosome length | 31307711 |
| location | 27526123 ~ 27545526 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU125340 | lncRNA | upstream | 44429 | 27498431 ~ 27498630 (+) | True | G105981 |
| TU125251 | lncRNA | upstream | 308835 | 27229784 ~ 27234224 (+) | True | G105904 |
| TU125136 | lncRNA | upstream | 398028 | 27141845 ~ 27145031 (+) | True | G105855 |
| TU125117 | lncRNA | upstream | 413430 | 27129348 ~ 27129629 (+) | True | G105841 |
| TU124999 | lncRNA | upstream | 477036 | 27064691 ~ 27066023 (+) | True | G105732 |
| TU125432 | lncRNA | downstream | 56641 | 27602158 ~ 27602734 (+) | True | G106064 |
| TU125500 | lncRNA | downstream | 180885 | 27726402 ~ 27729161 (+) | True | G106118 |
| TU125760 | lncRNA | downstream | 552212 | 28097729 ~ 28098001 (+) | True | G106343 |
| XR_004578326.1 | lncRNA | downstream | 688290 | 28233807 ~ 28244868 (+) | True | LOC117597547 |
| XR_004578327.1 | lncRNA | downstream | 688290 | 28233807 ~ 28244868 (+) | False | LOC117597547 |
| XM_026913265.2 | mRNA | upstream | 414646 | 27120185 ~ 27128413 (+) | True | LOC113526324 |
| XM_026914232.2 | mRNA | upstream | 435488 | 27105466 ~ 27107571 (+) | True | LOC113526836 |
| XM_034304948.1 | mRNA | upstream | 479998 | 26913328 ~ 27063061 (+) | False | si:dkey-205h23.2 |
| XM_034304962.1 | mRNA | downstream | 12923 | 27558440 ~ 27600569 (+) | False | iqsec3b |
| XM_026913411.2 | mRNA | downstream | 16950 | 27562467 ~ 27600569 (+) | True | iqsec3b |
| XM_026913412.2 | mRNA | downstream | 16950 | 27562467 ~ 27596919 (+) | False | iqsec3b |
| XM_026914063.2 | mRNA | downstream | 164659 | 27710176 ~ 27713570 (+) | True | gcsha |
| XM_026914112.2 | mRNA | downstream | 301301 | 27846818 ~ 27854765 (+) | True | nob1 |
| TU125244 | other | upstream | 328489 | 27211389 ~ 27214570 (+) | True | G105898 |
| TU124829 | other | upstream | 709632 | 26830978 ~ 26833427 (+) | True | G105569 |
| TU123982 | other | upstream | 2227846 | 25294899 ~ 25315213 (+) | False | G104781 |
| TU123976 | other | upstream | 2236248 | 25294899 ~ 25306811 (+) | True | G104781 |
| TU122935 | other | upstream | 3800744 | 23739502 ~ 23742315 (+) | False | cstf3 |
| trnal-caa_8 | other | downstream | 13319 | 27558836 ~ 27558946 (+) | True | trnal-caa_8 |
| trnal-caa_9 | other | downstream | 14870 | 27560387 ~ 27560497 (+) | True | trnal-caa_9 |
| XR_003402810.2 | other | downstream | 399273 | 27944790 ~ 27966308 (+) | True | LOC113526832 |
| TU125656 | other | downstream | 414008 | 27959525 ~ 27961771 (+) | False | LOC113526832 |
| TU125683 | other | downstream | 521395 | 28066912 ~ 28070685 (+) | True | uraha |
