Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU125432 |
| length | 577 |
| lncRNA type | inter_gene |
| GC content | 0.31 |
| exon number | 1 |
| gene id | G106064 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047600.1 |
| NCBI id | CM018546.1 |
| chromosome length | 31307711 |
| location | 27602158 ~ 27602734 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU125360 | lncRNA | upstream | 56641 | 27543059 ~ 27545517 (+) | False | ddx11 |
| TU125340 | lncRNA | upstream | 103528 | 27498431 ~ 27498630 (+) | True | G105981 |
| TU125251 | lncRNA | upstream | 367934 | 27229784 ~ 27234224 (+) | True | G105904 |
| TU125136 | lncRNA | upstream | 457127 | 27141845 ~ 27145031 (+) | True | G105855 |
| TU125117 | lncRNA | upstream | 472529 | 27129348 ~ 27129629 (+) | True | G105841 |
| TU125500 | lncRNA | downstream | 123668 | 27726402 ~ 27729161 (+) | True | G106118 |
| TU125760 | lncRNA | downstream | 494995 | 28097729 ~ 28098001 (+) | True | G106343 |
| XR_004578326.1 | lncRNA | downstream | 631073 | 28233807 ~ 28244868 (+) | True | LOC117597547 |
| XR_004578327.1 | lncRNA | downstream | 631073 | 28233807 ~ 28244868 (+) | False | LOC117597547 |
| TU125917 | lncRNA | downstream | 787464 | 28390198 ~ 28450197 (+) | True | G106477 |
| XM_034304962.1 | mRNA | upstream | 1589 | 27558440 ~ 27600569 (+) | False | iqsec3b |
| XM_026913411.2 | mRNA | upstream | 1589 | 27562467 ~ 27600569 (+) | True | iqsec3b |
| XM_026913412.2 | mRNA | upstream | 5239 | 27562467 ~ 27596919 (+) | False | iqsec3b |
| XM_026914193.2 | mRNA | upstream | 56632 | 27526123 ~ 27545526 (+) | True | ddx11 |
| XM_026914194.2 | mRNA | upstream | 56632 | 27526123 ~ 27545526 (+) | False | ddx11 |
| XM_026914063.2 | mRNA | downstream | 107442 | 27710176 ~ 27713570 (+) | True | gcsha |
| XM_026914112.2 | mRNA | downstream | 244084 | 27846818 ~ 27854765 (+) | True | nob1 |
| XM_026913763.2 | mRNA | downstream | 257294 | 27860028 ~ 27863418 (+) | True | nip7 |
| XM_026914289.2 | mRNA | downstream | 287027 | 27889761 ~ 27891260 (+) | True | LOC113526868 |
| XM_026914104.2 | mRNA | downstream | 300037 | 27902771 ~ 27915940 (+) | False | pdpr |
| trnal-caa_9 | other | upstream | 41661 | 27560387 ~ 27560497 (+) | True | trnal-caa_9 |
| trnal-caa_8 | other | upstream | 43212 | 27558836 ~ 27558946 (+) | True | trnal-caa_8 |
| TU125244 | other | upstream | 387588 | 27211389 ~ 27214570 (+) | True | G105898 |
| TU124829 | other | upstream | 768731 | 26830978 ~ 26833427 (+) | True | G105569 |
| TU123982 | other | upstream | 2286945 | 25294899 ~ 25315213 (+) | False | G104781 |
| XR_003402810.2 | other | downstream | 342056 | 27944790 ~ 27966308 (+) | True | LOC113526832 |
| TU125656 | other | downstream | 356791 | 27959525 ~ 27961771 (+) | False | LOC113526832 |
| TU125683 | other | downstream | 464178 | 28066912 ~ 28070685 (+) | True | uraha |
| XR_004578358.1 | other | downstream | 543529 | 28146263 ~ 28161869 (+) | False | def8 |
| XR_004578357.1 | other | downstream | 543529 | 28146263 ~ 28161869 (+) | False | def8 |
