RNA id: TU125917


Basic Information

Item Value
RNA id TU125917
length 1488
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G106477
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 28390198 ~ 28450197 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cttttttttttttttttttttttttttttGATGGTTGGgagttttattctctttatagTATACAATAACCTTAAGAGGAAGTGGTCTTCCAGGACGCATTCATTGAGGTATAGACAAAGTCATACATCGACTTTTCACTGATCTGCACACTGAAACTTAACATGAAGTTGTGTAACGTGGTCCACTGATAAAACATTAAAGACAATTTATTTCTTCCAAGCTTTGTTCTCATAGTCCCAGTTGGCGGAAAAGCCCTCGACGGGGTTGATCCTCATGTCGAGCATCCTCTGGAGCTCCTTCTGCTTGTACTCGGGGTCGAAGGTGTGAGGAACGTCTCCGTAAACTGCAAAACCGAAACAGAATTACTTCAGTGACATTTACACTCAAGTTTTCTGTTGATACAGAAGGGTATTGAATATCAGATAACCGCTAACTACAGTACGTTAAGGACAAGTACGTGTACCATATTTCCTCTGCCACAGCACGACAAAGCCAGTGAAGCCAATGAAGAACAAGACTCCAGCGACCACGGTCTTCCACTCCCCTGTACCCTTATCCATCTCAGCAAAGCTGTCCTTGAAGCTGATACGGTACACTGCAACAAGCAAAGAAACAACAATAAGTAAGGATCCAAAGTAAAGTCTGGGAATATGCAGAAACGATATCTTGTTCATTATATCCTATCATAAATCATAGAAAAGAGCGAGTGCTTCTCATATCTCctgaagaaacaaaatgaaaccaattatttatgtttaaaagtgttGGGGAAGCGAGATTTATGTAAGATAGTGAGATCTTAGCActatgttatggtcatgtgacctactaatcaTCAACTTGTCTGGCTACAAATCTTACAAGTGCTTATAATAACGGTTATTAAAGGCTATTAATACGAGGTTTGTGCAGTACGCATAGACTTTTTGGTTAGCGTACATCTCTCCGATTTAAAGTGTGAATCTATCATTAATACTACACGTCCCCTGGCAACATTTACCGAACAGACACAGGTCTGGAAATCTGAACCATGTGAATCTTCGTGTGTACGTACGTGCAACTTTCTCCTCGTTGGACAACACAGCCCAGGAgcccttctccttctctttgaGGGACTTCTGCTCCGGATTCAGTTGCTGGACATATCTAATCTCAGGCAGGGGGACCTCACGGCGGTCAAAATATGCTGGGAGGGTGTAGTCCTCCACCTTGGCGACTcctaaaagaaaacaagaacagGCCCATTAGACACAAAAAGGGATGAAAACCACTGGAATAAGGAACCGTAGTCTGACTAGCTGTTAATTTACTTGGTACCAGATTCCAAGGAACCGCCCTCTATGATAATTCACCATCAACACcaatattttattgctttaatgTGTTAAGTTGCCTAACAGCCATGTCGAGTCTGAACCAGGACTGAACTGCATCGTCTCAGTTCCTCATTACTTAGGCACTATGAGAAACAGGAGACAACATTTCCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578326.1 lncRNA upstream 145330 28233807 ~ 28244868 (+) True LOC117597547
XR_004578327.1 lncRNA upstream 145330 28233807 ~ 28244868 (+) False LOC117597547
TU125760 lncRNA upstream 292197 28097729 ~ 28098001 (+) True G106343
TU125500 lncRNA upstream 661037 27726402 ~ 27729161 (+) True G106118
TU125432 lncRNA upstream 787464 27602158 ~ 27602734 (+) True G106064
TU125977 lncRNA downstream 119273 28569470 ~ 28571760 (+) True G106531
TU125973 lncRNA downstream 122482 28572679 ~ 28573466 (+) True G106527
TU125975 lncRNA downstream 125792 28575989 ~ 28577269 (+) True G106529
TU125968 lncRNA downstream 128162 28578359 ~ 28584800 (+) True G106522
TU125993 lncRNA downstream 146170 28596367 ~ 28597554 (+) True G106547
XM_026913720.2 mRNA upstream 166694 28215787 ~ 28223504 (+) True mthfsd
XM_026913719.2 mRNA upstream 166694 28215789 ~ 28223504 (+) False mthfsd
XM_026914070.2 mRNA upstream 175116 28206753 ~ 28215082 (+) True gas8
XM_026913727.2 mRNA upstream 208995 28163685 ~ 28181203 (+) True LOC113526563
XM_026914254.2 mRNA upstream 228329 28150881 ~ 28161869 (+) False def8
XM_026913332.2 mRNA downstream 2863 28453060 ~ 28460177 (+) True emc8
XM_026914363.2 mRNA downstream 11632 28461829 ~ 28467750 (+) False gins2
XM_026914362.2 mRNA downstream 11635 28461832 ~ 28467750 (+) True gins2
XM_026914287.2 mRNA downstream 291838 28742035 ~ 28750741 (+) True cibar2
XM_034305423.1 mRNA downstream 291838 28742035 ~ 28750741 (+) False cibar2
XR_004578358.1 other upstream 228329 28146263 ~ 28161869 (+) False def8
XR_004578357.1 other upstream 228329 28146263 ~ 28161869 (+) False def8
XR_004578359.1 other upstream 228329 28146263 ~ 28161869 (+) False def8
TU125683 other upstream 319513 28066912 ~ 28070685 (+) True uraha
TU125656 other upstream 428427 27959525 ~ 27961771 (+) False LOC113526832

Expression Profile