RNA id: TU125977


Basic Information

Item Value
RNA id TU125977
length 2291
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G106531
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 28569470 ~ 28571760 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGCAGGCACACATCAGACGTCCAATCTGTCTAACTTGACTatcctgatacacacacacacatgcacacacacattacatcaaTGTCTGTGCTATACCAGTTCTTTCCTTCTACATGAGCTCTCCTGAACGAGTGTCTCTGTTTACCTGTTGGGGgagcatttatttttgctcataaATATCACTTCAAATCAGTAAAAGTTCTCCTGACTGAActcctttatcctatgatgaaacacttctatcctgatgggtgtgGCCTTTACCAGGATGGATCCGCCCCATTAAGAGAGCACGAGGGTTCACTGAATGATGTGTAACgaggatgaaaatgattttgtgAGTGAGGTGAGGTGTTGGATAGCGCTCACCACCGCCACTATCAAAACACAAACTAAGGGAATATCTCTtgaaagaatggtgttcattaCTCCAGCACATTTCTAGAGACTTGTGGCGAGGAGCAGTGAAGCTGTTCCTGAAGCTCGTAGCGGCCCAACGCCTTACTACCCCACATTATGTTGGTTATTCCTTTACTTTGTCACCCTTCTGCAGTATATCACTACCTGGTATACACTCACATTAGCAACATGCCACCAGAAGTTTGTTCAAAACACTCATACTAACTTTTTTAGttgtgaattgtgtaaaaagaaaaaaaaagtggtttggTAATCCCTCGTTAGCTAAAGATGTGCTTTTTTAGGTAGGATCATAGATAAGATGACTAATCATTCATTAAAGCTTATGCTTGGCCAATCCAATTTGGGTGGAGCTTCACCCCAATAGTCATAGAAAAACACCAAATCTAGAGCAGGAGCTAAAAAACACACTCTTAAAAATGCTGAATGCTTAAGGTTGTTTGGTCTTCCCCCtgggttctatatagaaccctgTTCGGAGAACCCTTAATTATGTAATGAACCCTGAAAACCCTTTAAATTATTGGGTATGTGTAtggtacaaactccaaattattcaGCATTATTTTCTACTTAATACCTACAACCTATCAAATTGAGCTTAAACTGTCTTGCTCATTCAGATATTCTTAGAAACAATATCTCTTCAagtgttctttaagggttcttagcaaaagggttctacttggaaccctttctggtAGGGTAACAGGCTGTTGTATGTTTCTACATAGAAGCTTTATAGGTTCCCCTGgaaggacaaccaaagaacccaaaAGTATACAGCACAGCAGCTAAAACCAGCCCAGGTTTCTTTGGTGgaaacatgtctaacattcctGAAAAGTTCCTAAGTTTGTGAACAGCttcctgtggtggaaatgtAGGGTCCTTGAAAAGTTTCCTAGGGTTCCTGAATCTCTGAAAAGTTTTCTGGGACTCCTGTGTTCCTGAAAAAGTTTCTAGGATTCCCAAGTTCCTAAGAAGGTTTCTGGATTCTTTAAAACACGTCAGCAGTGGAAACCTCTTTTCCTTTCCCCTTTTCCTCTTTCAGAACACCCTTGTTGCCAGTATCATTCCTGTTCAGTGAAGTACTTAGCTACCATTTTGGTCATAAAGCTGCCGCCCTGATATGCACCCGTGTGAAGGCTGAACACATGCGATGCTGAAGGATTTGCTGATGCACATAAACGAAGGCCTGACATGTCCCTGCTTTCACACAAATCAATTTTCCCCGTCACACCCACTTAAAGAGCAGAAGCGTAACACGTTCCTGCTGAAGACATCTTGTAATTCAAgaaatagggaaaaaaatgactggaatgaaaatatgttttcagcattttgtattcttcttttgtgtgttttctgttggtAGGGTACTCGAGTGTGGTTCATCGCACTGAGTACAGTAATCAGCTTTGCCCAAACATTTAGAGGGCAATTAAGGGAGCACAAAGCACAGCTCTGAACCCATAAAATGTTATAACATCACTCTATGTCTTTGCCTCCCTAGTGAGTATGTGGTTATGTTCTCACTGGCTGGTCCTTCAGCTCATttggcccacacacacagaaacacacacacacacgcaaacacacacacacacacacagataaaaccCAGAGCCTGCTTGTGTGTCTCTTCTCCAACAGTTGTAGCACCAAGTGTAGTGAGAGAAtagagaagtgtgtgagaaGAGAGTCTATCAATCATGTCTAAACTTGGCAAGAGATCTCACCAGTGACAAGAGACAGAGATGTTGCCCTTTGGCATTCTCAAGTGCCCTCACTTTATGAGTGAGTTCTCCACAGAGTTCATTTCTTGGCATGTAAACATAACGATCAATCACGTAACCTGACCCGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125917 lncRNA upstream 119273 28390198 ~ 28450197 (+) True G106477
XR_003402825.2 lncRNA upstream 120835 28430003 ~ 28448635 (+) True LOC113526961
XR_004578326.1 lncRNA upstream 324602 28233807 ~ 28244868 (+) True LOC117597547
XR_004578327.1 lncRNA upstream 324602 28233807 ~ 28244868 (+) False LOC117597547
TU125760 lncRNA upstream 471469 28097729 ~ 28098001 (+) True G106343
TU125973 lncRNA downstream 919 28572679 ~ 28573466 (+) True G106527
TU125975 lncRNA downstream 4229 28575989 ~ 28577269 (+) True G106529
TU125968 lncRNA downstream 6599 28578359 ~ 28584800 (+) True G106522
TU125993 lncRNA downstream 24607 28596367 ~ 28597554 (+) True G106547
TU125994 lncRNA downstream 26926 28598686 ~ 28599558 (+) True G106548
XM_026914363.2 mRNA upstream 101720 28461829 ~ 28467750 (+) False gins2
XM_026914362.2 mRNA upstream 101720 28461832 ~ 28467750 (+) True gins2
XM_026913332.2 mRNA upstream 109293 28453060 ~ 28460177 (+) True emc8
XM_026913720.2 mRNA upstream 345966 28215787 ~ 28223504 (+) True mthfsd
XM_026913719.2 mRNA upstream 345966 28215789 ~ 28223504 (+) False mthfsd
XM_026914287.2 mRNA downstream 170275 28742035 ~ 28750741 (+) True cibar2
XM_034305423.1 mRNA downstream 170275 28742035 ~ 28750741 (+) False cibar2
XM_026914288.2 mRNA downstream 170275 28742035 ~ 28750741 (+) False cibar2
XM_026913746.2 mRNA downstream 202561 28774321 ~ 28778017 (+) True si:ch73-103b9.2
XM_034305076.1 mRNA downstream 227704 28799464 ~ 28804072 (+) False cmc2
XR_004578358.1 other upstream 407601 28146263 ~ 28161869 (+) False def8
XR_004578357.1 other upstream 407601 28146263 ~ 28161869 (+) False def8
XR_004578359.1 other upstream 407601 28146263 ~ 28161869 (+) False def8
TU125683 other upstream 498785 28066912 ~ 28070685 (+) True uraha
TU125656 other upstream 607699 27959525 ~ 27961771 (+) False LOC113526832

Expression Profile