RNA id: TU126202


Basic Information

Item Value
RNA id TU126202
length 733
lncRNA type sense_over
GC content 0.41
exon number 5
gene id cmc2
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 28799464 ~ 28804072 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATCAATGCACGCGCTCTGGCATGGTGGAGTGACAATTATCCGACATCGTGAAGAATAAATATCCTTTAATGgagattttaaattaaaaatatagcGTTATAAATCCACCGAAAACCAAAGacagGTACTCGTTAAACTCAGGATGCACCCGGACCTGTcaccacatttacacactgatgaGTGCAATGAACTGATTTCGCTGCTCAAACAGTGTCACAAAGAgCACAACTTCCTCCGGTTCTTTGGAACGTGTAACGATGTGGATCGATCGATGAGGGAGTGTCTTAACAAAGAGtaTCTGGCAAAGCGAGAACGCAGCAAAGCTCACGCAGAGCAGATGAGACAGCGGCTCAGGGAAGGACCTAAAGCTCAACCGTGAGATGGAAATTTTGGAAatagaaaatgttaaatatattcagAACTTTGGCTTTTTAGGAGAGATCTTCGGACTTCGTGGACGGCTGATGTGCTGCGGAGGATGTTGATCTATCATGGACATGGAAGAAatttaatttactcaaacaggaATAAAATCATAGATTATAGTAATTCTAATTATTACTATTGTACAGCTATATGTATAACCTCACAGCTACAAGCACTCAGAATCCCACTGATTCTATACTGTGTATGGGGCACAGTTACTTTTAAACGGATAAAGTGGGTTCACACTGATGGTTAAAATGCATTCTCTCATCGCGAAGATCAAACACAATTAAAGAAATGCATCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126146 lncRNA upstream 75166 28724185 ~ 28724493 (+) True G106688
TU125998 lncRNA upstream 94307 28698428 ~ 28705352 (+) True G106552
TU126020 lncRNA upstream 151476 28647963 ~ 28648183 (+) True G106571
TU126010 lncRNA upstream 165293 28634158 ~ 28634366 (+) True G106561
TU126001 lncRNA upstream 171066 28623127 ~ 28628593 (+) True G106555
TU126204 lncRNA downstream 3714 28807432 ~ 28808212 (+) True G106733
TU126259 lncRNA downstream 75560 28879278 ~ 28879617 (+) True G106788
TU126279 lncRNA downstream 274510 29078228 ~ 29078598 (+) True G106808
TU126338 lncRNA downstream 341236 29144954 ~ 29145520 (+) True G106867
TU126561 lncRNA downstream 678516 29482234 ~ 29482464 (+) True G107075
XM_026913746.2 mRNA upstream 21642 28774321 ~ 28778017 (+) True si:ch73-103b9.2
XM_026914287.2 mRNA upstream 48918 28742035 ~ 28750741 (+) True cibar2
XM_034305423.1 mRNA upstream 48918 28742035 ~ 28750741 (+) False cibar2
XM_026914288.2 mRNA upstream 48918 28742035 ~ 28750741 (+) False cibar2
XM_026914363.2 mRNA upstream 331909 28461829 ~ 28467750 (+) False gins2
XM_034304985.1 mRNA downstream 716729 29520447 ~ 29550296 (+) True LOC117597519
XM_034304986.1 mRNA downstream 912875 29716593 ~ 29724067 (+) True iqcg
XM_034305375.1 mRNA downstream 1302975 30106693 ~ 30126222 (+) True ddb1
XM_026914447.2 mRNA downstream 1454350 30258068 ~ 30265561 (+) True taldo1
XM_034304956.1 mRNA downstream 1468826 30272544 ~ 30285534 (+) True cd151l
XR_004578358.1 other upstream 637790 28146263 ~ 28161869 (+) False def8
XR_004578357.1 other upstream 637790 28146263 ~ 28161869 (+) False def8
XR_004578359.1 other upstream 637790 28146263 ~ 28161869 (+) False def8
TU125683 other upstream 728974 28066912 ~ 28070685 (+) True uraha
TU125656 other upstream 837888 27959525 ~ 27961771 (+) False LOC113526832

Expression Profile