RNA id: TU126561


Basic Information

Item Value
RNA id TU126561
length 231
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G107075
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 29482234 ~ 29482464 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

caaacattagttttccagcacaaaatgaaacgttacagaaaaatgtttgtatgtcagtaaagaaagcagcagattacgtaagagacacttttcagataaaaacataatgaaggctgctgggtttcgctgcagaaataagaagcgagtcgacagtcaaagtctccagaagaactgtggctgcttctgcaagatgctcagtaacacttccagctcatttccttataaaactgc

Function

GO: NA

KEGG:

id description
ko04020 Calcium signaling pathway
ko04724 Glutamatergic synapse
ko04721 Synaptic vesicle cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126338 lncRNA upstream 336714 29144954 ~ 29145520 (+) True G106867
TU126279 lncRNA upstream 403636 29078228 ~ 29078598 (+) True G106808
TU126259 lncRNA upstream 602617 28879278 ~ 28879617 (+) True G106788
TU126204 lncRNA upstream 674022 28807432 ~ 28808212 (+) True G106733
TU126202 lncRNA upstream 678516 28799659 ~ 28803718 (+) False cmc2
TU126633 lncRNA downstream 202910 29685374 ~ 29689816 (+) True G107140
TU126730 lncRNA downstream 440288 29922752 ~ 29923072 (+) True G107216
TU126736 lncRNA downstream 488414 29970878 ~ 29971093 (+) True G107222
TU126737 lncRNA downstream 489018 29971482 ~ 30064438 (+) True G107223
TU126906 lncRNA downstream 782500 30264964 ~ 30356549 (+) True G107381
XM_034305076.1 mRNA upstream 678162 28799464 ~ 28804072 (+) False cmc2
XM_026914161.2 mRNA upstream 678169 28799644 ~ 28804065 (+) True cmc2
XM_026913746.2 mRNA upstream 704217 28774321 ~ 28778017 (+) True si:ch73-103b9.2
XM_026914287.2 mRNA upstream 731493 28742035 ~ 28750741 (+) True cibar2
XM_034304985.1 mRNA downstream 37983 29520447 ~ 29550296 (+) True LOC117597519
XM_034304986.1 mRNA downstream 234129 29716593 ~ 29724067 (+) True iqcg
XM_034305375.1 mRNA downstream 624229 30106693 ~ 30126222 (+) True ddb1
XM_026914447.2 mRNA downstream 775604 30258068 ~ 30265561 (+) True taldo1
XM_034304956.1 mRNA downstream 790080 30272544 ~ 30285534 (+) True cd151l
XR_004578358.1 other upstream 1320365 28146263 ~ 28161869 (+) False def8
XR_004578357.1 other upstream 1320365 28146263 ~ 28161869 (+) False def8
XR_004578359.1 other upstream 1320365 28146263 ~ 28161869 (+) False def8
TU125683 other upstream 1411549 28066912 ~ 28070685 (+) True uraha
TU125656 other upstream 1520463 27959525 ~ 27961771 (+) False LOC113526832

Expression Profile