RNA id: TU126633


Basic Information

Item Value
RNA id TU126633
length 2272
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G107140
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 29685374 ~ 29689816 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttttttttttaagatatgcTGAAAAATCAGTGTCTCTTTATAATCACAGCCAGCATCCAGGTGGAGTTTCTCATTTAAGCATCATGTTTGTGAGAGTTTTCAGCAGCAGAACTCGTTTTtgtggtcatttttttaatattttaagttttaGCTTCTTATGAGATGAAGAGAGTAAATGCGGCAGCTCGGGTCGGTTAACGCTGTGGCTAAGCTCGACCTCGGGGGTTTTAGGTTAGCCTGGTCGTGGGAGTGATGCGGTCACGCCACGTGAGGTTGAGGGTGATGCAGCTCCACTCAGCGCTCGTTAGTGCAACCTGAACTGACAGCTTAGTGTTACTCGGGTTACACCGGTGTCTCGTTACTGCTGTAAGCGTGCCTGCCTGCGAGCCTCCTACAGCGTGTACACAAAAGATGAAACCCTGTATGCCACGACTCTGCCTCCAAGCACATCCACGCTAGCTTTCCTTCACCGCTCCAGACCTGACAACCCCTGAAGAGGAATAATGCCGAGCTGGTAAAAACGCAGCAAGCAGTAAAAACCGCAACGCAGTAGGTTTTCCATAAAGTCGTGCTCAAAAACTGTTTCCATGCATCTGCACTGACTAGCGCAGGAGAGCAaacagcaatgtttttttttttcaaataactATGACTTcaattaaaattacttttaaagtgttacatttcacacttcactataggaaatatttaatctttttttccccttattaaAAATTTCGTCCTTTGTTCCTCTTGATTTTCTATCCCATCCCAAATAAACAGAGATAAGcgattttaaatatatacacgtctaatgttagctaagttgaaTATACATTAATAGACTTTAATGGAAACCATTCTCCAGTGCCTGTGACAGAAAACGAGGACGCCGCGTCAGCGAatctttcaagcaggaaaatcGAGACACAAGTCGAAAGGAGAGCACCGGTCCCAAGATCACTACTGCAAGATGAGggaaaaggggcggggcttccaggggtgTCAGTTAACTACAGATCTTCAACCCAATTTTTCCCAAAAATCGCacatcataaaataattatttgtttgcGAGTTGAGGTCATCGTTGGAACGCACAATGTAAGCGCTCACGTTATCAGCGGCTGATTTTTTTACACGCCACTCCAACCTAAAATGGCCAccattaaagtttttttaaaatcaaaatctcATCCAAAAGTCACCGGTCGGAGGACGGCATAAAATAACGCCAAACTCGTGAAACAGCCACGAATATAATAGTGGCGATCGCTGAACCAAACAAAACACGTGGATTTACAAGAAGCGCGAGTTGTTGATTTGCGGCAGCAGAAAGACGTCTCTTTGACGTCTCATCCGAGCTCAACCGAGTCACAACGGAAATAAACAGAGAACGAATTCCAGCTTCCTGCATCCTTATTACACAAAGCTCTGCAGAAGTgtcattcattctctctttttttaagccACGAACAGCTTCAaactctttcactgtttaaaatgtgtttccTCCAGGCACAACAACGCTACGATTACACCGAGGACTCGTCTCTGTTTACGTGACACCATTTCTATGCGttctacacacacctcattttaatcCAGTATTTGTCATTTATTGTAAGCGCTTATTCTAGGAGGCGTGGCTGAACAAGTTTGATTATTattaggtcacatgaccatataTGAACATGTATGTAGGctgtacctgtgctaggaactcaaCAACGTACCTAAAATCCCTGGAAAAGTCACTTCTCTGAAACGTCCTTTTAACATCAtctatcatttttatattaactcATTTTGGTTTCAGTGTGAGATGATAGAAAAGCATGAGCGCTTCCTGGAGAGTCTTTACACATCGATTTAAAAGACAACAACTGAAATAAATCGATGTAACTCGGTAAAAAAAATAACGGATATTTTGAAACTGATAGCAAGGTGATTTGTTGTAACTCTGATccttttaaaatagtccttctctacatcTTCATCATTTGTGAATTAACGGTAGACCCGAACAAATGTGGTCACGTATTGATCGAAGGCTACGATAcggtatcatatcatatcataacaGATTCAGGGGCATTGTCAAACATCGAATAGTTGCCTTATTAATAAAAATCGTACTGTATGGAAGCCTGAAGTTTACATCTCCAGTCTATTCTGCAGAAAAAGCACTAAAACTCAACTCTTTTCCCCCACAGGATTTAATAAAACCTTTCCCAAGATTACCATTTCTATAAAACCTTTTACACTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126561 lncRNA upstream 202910 29482234 ~ 29482464 (+) True G107075
TU126338 lncRNA upstream 539854 29144954 ~ 29145520 (+) True G106867
TU126279 lncRNA upstream 606776 29078228 ~ 29078598 (+) True G106808
TU126259 lncRNA upstream 805757 28879278 ~ 28879617 (+) True G106788
TU126204 lncRNA upstream 877162 28807432 ~ 28808212 (+) True G106733
TU126730 lncRNA downstream 232936 29922752 ~ 29923072 (+) True G107216
TU126736 lncRNA downstream 281062 29970878 ~ 29971093 (+) True G107222
TU126737 lncRNA downstream 281666 29971482 ~ 30064438 (+) True G107223
TU126906 lncRNA downstream 575148 30264964 ~ 30356549 (+) True G107381
TU126913 lncRNA downstream 671774 30361590 ~ 30429223 (+) True G107387
XM_034304985.1 mRNA upstream 135078 29520447 ~ 29550296 (+) True LOC117597519
XM_034305076.1 mRNA upstream 881302 28799464 ~ 28804072 (+) False cmc2
XM_026914161.2 mRNA upstream 881309 28799644 ~ 28804065 (+) True cmc2
XM_026913746.2 mRNA upstream 907357 28774321 ~ 28778017 (+) True si:ch73-103b9.2
XM_026914287.2 mRNA upstream 934633 28742035 ~ 28750741 (+) True cibar2
XM_034304986.1 mRNA downstream 26777 29716593 ~ 29724067 (+) True iqcg
XM_034305375.1 mRNA downstream 416877 30106693 ~ 30126222 (+) True ddb1
XM_026914447.2 mRNA downstream 568252 30258068 ~ 30265561 (+) True taldo1
XM_034304956.1 mRNA downstream 582728 30272544 ~ 30285534 (+) True cd151l
XM_034304955.1 mRNA downstream 582728 30272544 ~ 30285534 (+) False cd151l
XR_004578358.1 other upstream 1523505 28146263 ~ 28161869 (+) False def8
XR_004578357.1 other upstream 1523505 28146263 ~ 28161869 (+) False def8
XR_004578359.1 other upstream 1523505 28146263 ~ 28161869 (+) False def8
TU125683 other upstream 1614689 28066912 ~ 28070685 (+) True uraha
TU125656 other upstream 1723603 27959525 ~ 27961771 (+) False LOC113526832

Expression Profile