RNA id: TU126730


Basic Information

Item Value
RNA id TU126730
length 321
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G107216
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 29922752 ~ 29923072 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cccagcatgacaatgcccctgtgcacaaagcgagctccatgaagacatggtgtgtgaaggttggagtggaagaactcgagtgtcctgcacagagccctgacctcaaccccactgaacacctttgggatgaactggaacaccgactgaaccccagacctcctcgacatcccaacatcagtgcctgacctcactaatgctcttgtagctgaatgaacacaaatccccacagccacgctccaacatctagtggaaagcttcccagaagagtggagctcattataacagcaaacacaggggaataaatctggaatgagacgttca

Function

GO: NA

KEGG:

id description
ko00310 Lysine degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126633 lncRNA upstream 232936 29685374 ~ 29689816 (+) True G107140
TU126561 lncRNA upstream 440288 29482234 ~ 29482464 (+) True G107075
TU126338 lncRNA upstream 777232 29144954 ~ 29145520 (+) True G106867
TU126279 lncRNA upstream 844154 29078228 ~ 29078598 (+) True G106808
TU126259 lncRNA upstream 1043135 28879278 ~ 28879617 (+) True G106788
TU126736 lncRNA downstream 47806 29970878 ~ 29971093 (+) True G107222
TU126737 lncRNA downstream 48410 29971482 ~ 30064438 (+) True G107223
TU126906 lncRNA downstream 341892 30264964 ~ 30356549 (+) True G107381
TU126913 lncRNA downstream 438518 30361590 ~ 30429223 (+) True G107387
TU126894 lncRNA downstream 471188 30394260 ~ 30498315 (+) False dnaja2b
XM_034304986.1 mRNA upstream 198685 29716593 ~ 29724067 (+) True iqcg
XM_034304985.1 mRNA upstream 372456 29520447 ~ 29550296 (+) True LOC117597519
XM_034305076.1 mRNA upstream 1118680 28799464 ~ 28804072 (+) False cmc2
XM_026914161.2 mRNA upstream 1118687 28799644 ~ 28804065 (+) True cmc2
XM_026913746.2 mRNA upstream 1144735 28774321 ~ 28778017 (+) True si:ch73-103b9.2
XM_034305375.1 mRNA downstream 183621 30106693 ~ 30126222 (+) True ddb1
XM_026914447.2 mRNA downstream 334996 30258068 ~ 30265561 (+) True taldo1
XM_034304956.1 mRNA downstream 349472 30272544 ~ 30285534 (+) True cd151l
XM_034304955.1 mRNA downstream 349472 30272544 ~ 30285534 (+) False cd151l
XM_034305470.1 mRNA downstream 381560 30304632 ~ 30305794 (+) True LOC117597588
XR_004578358.1 other upstream 1760883 28146263 ~ 28161869 (+) False def8
XR_004578357.1 other upstream 1760883 28146263 ~ 28161869 (+) False def8
XR_004578359.1 other upstream 1760883 28146263 ~ 28161869 (+) False def8
TU125683 other upstream 1852067 28066912 ~ 28070685 (+) True uraha
TU125656 other upstream 1960981 27959525 ~ 27961771 (+) False LOC113526832

Expression Profile