RNA id: TU126894


Basic Information

Item Value
RNA id TU126894
length 1646
lncRNA type read_through
GC content 0.43
exon number 3
gene id dnaja2b
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30394260 ~ 30498315 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctcacacacacacacacacactctcacacacactcacacacacacacactctcacacacacacacacactcactcacacacacacacacacacacacacacacacacacacacacacacggtcaCAGTGTATCACACCTGGAATAAAACCTTCGACTCCTCTCCTCCAACCCAGACCTGCCAGCCTTTTAACGTGTTTAAAACTACGCTGCTACGAGATTTCGCTCAAAAATACGCAGTCGTctttttcctcacagaaaaaaaacgaCAGATCGAGATGCGAATccggaatgattgacagttgcgtaGATGTTTCGAACTCCGATATTAACGCTGCAGTCGACTTACCTCCGAAGTAGGGACTCAGAATTACGTCGCTTTTGATCTCTGTGCGTTTGAGCTACGAACGTGGATGGACGccttttgtgtttgtcttttgttagcaacaagctagctagctaaccgtAACgcgtgatgtatattttcctcctcggagtcagtgttatagatttaacaagcgaatatatctgtatgttgattgctctaaagtaaacattttgtgctgctgtgttcatcgctgatgctgtgagcggccattttgatttgacgtgAGTCTGGGAGACCGCCCCGCGTTCCCGACAAGGAATTCCTCAGGAATTGAGAGGATGTTTTACCTAGTCGGAGGTCGGAAATTTCGAGTTACGATCTTTAGTCCAATGCAGCGTAAGTGACCcgctggaagccccgcccccttccacCCATCCCACTCTCATCTCGCTGCGATTTTCCCGCTTGTATGATGCGGCgtcctcgctttctgtcaaatggagaatgtgaaaaattaaatgtttccttGAACGTTCATCGTGAAGGAAactggagagtgtgtgtatatatggggGTTTTTATGGTAACCACCAgcgtttgggggaaaaaaagctgccACTCGTCTGTTGTAGCAAAGATGGCGGCATTAGAAATGTTACATACACACTTACGAAGATGTTACGTACAGTAATCGATAAGAAAGTATCCATGTTGATTTTTCTATTAGCTAAACTTTAGCTAATACAGACGAGTGGCAGCGTTTCCCCCCCAAGCACCTGGTGATTACCGTAAAACCCCGtgaatacacacaacacactccagTTTGTACCTTGTGTGAAAGGACGATGTGAAGCGTTTCCATGGGGATGGCAGGTCTGTAATTTCTCATACCCCTCGCCCCGTCTCGTCTCGTCTcatctcatccctccatcctgtAAACCGCTGAATGCACACTAAATAACTCCTTTCATATCAGCTAAGACTGGAATGCTAAACTAGAACCTCCACCTCGCATTCGAAAAACACACgttttaaatgaataacaagaagcaaagaagaaaaaaacaaaaaaatatacacagaatgggttgtttttaattcattaccaCCGACATTACCATTGTAGacttttatatactgtatacatcactgaATATTTAAACTTGAAAAGCAATTGTGTATAGGATTTAagttataatcacacacacacacacacacacacacacacacacttctgaaacAGTATCAGAATGGAGACATTGGAGGACAAAAAgttcaataaaacatttatgtgtCTAATACACACTCGTCTGTCATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126906 lncRNA upstream 37711 30264964 ~ 30356549 (+) True G107381
TU126737 lncRNA upstream 329822 29971482 ~ 30064438 (+) True G107223
TU126736 lncRNA upstream 423167 29970878 ~ 29971093 (+) True G107222
TU126730 lncRNA upstream 471188 29922752 ~ 29923072 (+) True G107216
TU126633 lncRNA upstream 704444 29685374 ~ 29689816 (+) True G107140
TU127154 lncRNA downstream 59308 30557623 ~ 30562901 (+) True G107591
TU127204 lncRNA downstream 230519 30728834 ~ 30729657 (+) True G107629
XR_003402817.2 lncRNA downstream 329761 30828076 ~ 30829663 (+) True LOC113526871
TU127253 lncRNA downstream 329785 30828100 ~ 30829657 (+) False LOC113526871
TU127254 lncRNA downstream 349644 30847959 ~ 30848474 (+) True G107657
XM_034305175.1 mRNA upstream 14515 30378703 ~ 30379745 (+) False LOC117597544
XM_034305174.1 mRNA upstream 14515 30378703 ~ 30379745 (+) True LOC117597544
XM_034304987.1 mRNA upstream 40772 30311233 ~ 30353488 (+) True b4galnt3b
XM_034305470.1 mRNA upstream 88466 30304632 ~ 30305794 (+) True LOC117597588
XM_034304956.1 mRNA upstream 108726 30272544 ~ 30285534 (+) True cd151l
XM_034305428.1 mRNA downstream 87468 30585783 ~ 30592140 (+) True si:dkey-88e18.2
XM_034305152.1 mRNA downstream 130097 30628412 ~ 30666725 (+) True vwf
XM_034305153.1 mRNA downstream 130097 30628412 ~ 30657541 (+) False vwf
XM_034305560.1 mRNA downstream 169961 30668276 ~ 30687719 (+) True LOC113526339
XM_034305561.1 mRNA downstream 169961 30668276 ~ 30687719 (+) False LOC113526339
XR_004578358.1 other upstream 2232391 28146263 ~ 28161869 (+) False def8
XR_004578357.1 other upstream 2232391 28146263 ~ 28161869 (+) False def8
XR_004578359.1 other upstream 2232391 28146263 ~ 28161869 (+) False def8
TU125683 other upstream 2323575 28066912 ~ 28070685 (+) True uraha
TU125656 other upstream 2432489 27959525 ~ 27961771 (+) False LOC113526832

Expression Profile