RNA id: TU126906


Basic Information

Item Value
RNA id TU126906
length 949
lncRNA type read_through
GC content 0.34
exon number 2
gene id G107381
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30264964 ~ 30356549 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gatgatgatgatgatgatgatgatgatatgacacgGCGTGGTGAATAGTAACATAGACCACGTAACACTCTACTGTAACAATGTAACAAATATAACATTGTGACAATGCAGTAAATATTACCATGTAACAACTGTAACAATGTACCTGATGtaacaatgtaataaatgttGCTATGTAACAACTGCAACAACATAACTGATGTAACAATGTTACAATGTAATAAATGTTGCTATGTAACAACTGCAACAACGTAACTGATGTAACAATGTTACAATGTAACAACTGCAACAACGTAACTGATGTAACAATGtaacaatgtaataaatattactatgtaataatgtaataaatgttacTATGTAACAACTGCAACAATGTAACTGATGTAACTAATAAATCTCACTTTCAGTATTTGTTCTcagtgttaaacacacacacacacacacacacacacacacacacacacacacagtgttatatacagtaacGTCCTGTTCACTGTCCTCCACCAGCTGCATCAAACATCTTCTTCCTGCCCTCCATCCCTGACATGGCCTCCACATTCTTACGCCAGTCTCCCACCTCGGTGGtcagcacctacacacacacacacacacacacacacacacacacacacacacacacacacattctgatcAGGACTATGCAAAGTGTAATATGTGTGTTGTAGGTATTTTCAGGTATTGGTGAATATTTTTGGATATATTcccctgtttatttttatttattaacatatttacatttatttatttaattttaatttatttgtttgtttgtttaattatttatttgtttatatttctttgGGGTATTTTGGGGTACACCATATAGCAACAATACATAGCATCATACAACAACAGAATTAGGCCTAATGTCACTTTAATATTATTGACTGTAGTTCTGAAAACTTCTTgggctgtttatttt

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko04260 Cardiac muscle contraction
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126737 lncRNA upstream 200526 29971482 ~ 30064438 (+) True G107223
TU126736 lncRNA upstream 293871 29970878 ~ 29971093 (+) True G107222
TU126730 lncRNA upstream 341892 29922752 ~ 29923072 (+) True G107216
TU126633 lncRNA upstream 575148 29685374 ~ 29689816 (+) True G107140
TU126561 lncRNA upstream 782500 29482234 ~ 29482464 (+) True G107075
TU126913 lncRNA downstream 5041 30361590 ~ 30429223 (+) True G107387
TU126894 lncRNA downstream 37711 30394260 ~ 30498315 (+) False dnaja2b
TU126896 lncRNA downstream 37711 30394260 ~ 30498315 (+) False dnaja2b
TU126898 lncRNA downstream 37711 30394260 ~ 30498315 (+) False dnaja2b
TU126897 lncRNA downstream 37946 30394495 ~ 30498315 (+) False dnaja2b
XM_034305375.1 mRNA upstream 138742 30106693 ~ 30126222 (+) True ddb1
XM_034304986.1 mRNA upstream 540897 29716593 ~ 29724067 (+) True iqcg
XM_034304985.1 mRNA upstream 714668 29520447 ~ 29550296 (+) True LOC117597519
XM_034305076.1 mRNA upstream 1460892 28799464 ~ 28804072 (+) False cmc2
XM_026914161.2 mRNA upstream 1460899 28799644 ~ 28804065 (+) True cmc2
XM_034304988.1 mRNA downstream 9070 30365619 ~ 30408560 (+) True c2cd5
XM_034305175.1 mRNA downstream 22154 30378703 ~ 30379745 (+) False LOC117597544
XM_034305174.1 mRNA downstream 22154 30378703 ~ 30379745 (+) True LOC117597544
XM_034305529.1 mRNA downstream 54117 30410666 ~ 30426455 (+) True lmf2a
XM_034305443.1 mRNA downstream 135093 30491642 ~ 30498296 (+) True dnaja2b
XR_004578358.1 other upstream 2103095 28146263 ~ 28161869 (+) False def8
XR_004578357.1 other upstream 2103095 28146263 ~ 28161869 (+) False def8
XR_004578359.1 other upstream 2103095 28146263 ~ 28161869 (+) False def8
TU125683 other upstream 2194279 28066912 ~ 28070685 (+) True uraha
TU125656 other upstream 2303193 27959525 ~ 27961771 (+) False LOC113526832

Expression Profile