RNA id: TU127154


Basic Information

Item Value
RNA id TU127154
length 2420
lncRNA type inter_gene
GC content 0.44
exon number 7
gene id G107591
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30557623 ~ 30562901 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTCTCAGGTGCAGGACACTCAGGTGTGTCACAATTCACTGCATACAGTTTACAATTTAAACACACAGGTATGTACAGAAACTTCAAACCTGGACAGAAGATTTTATTTCAGTCATACAGACGCACTGCGGAAAAATTCCAAAAATTCATTTGGAAAAGGAAGCCCGGGAAACACTGTGAATTTTTCAGactgaaaatgtgaataaaataaaaaaggcactaaaaaaaaaggaaatgttggTTTGACCGTGTTCATCATTTAACTCATGATTCAGGAAGAGAATGTAGtgacgaggaaaaaaaaaaaagcagcaatgcctcattataatacattatagcACACTTATGAAGGACTTAACACAATAAATCTGCTTCAACCTAAAATATTGTTAGTAAAATGTACGCAGTGGTTAATGCTCCGCTTGTGAACAGTACTCTTAATAAGCACCATTACATGTAGTGACAAAATAACTGTGACGTTCAGCAGATTTGCTACACAAACAATCCTATATTTCATCATCGCATGCCGTAGAGACGGAGTACACGATCCGTAATGCAGCAAAATCCTTCCGCACTCGGCTTCAGAGACCTGAACACTCCAAAAAAGCGTTTATACAAAATGAATTCGGAATACTTTAAGTGTTCAGtgcattaacacacaaacacacacacacacacacacacaattatgcaTCTATCTAAGGAATGAACTTAAAACGTCCAACGTAAAAACGAGCTAatttcatcactgattatttccttttccaaaaaaaaaactagaaaattGTAACTGTACATAACTCTCAGTTATGGAAGTTTGCACGATTGAGATTGTTTACGAGGAATCAGGAAATAAATTACAGTCCATTTCGCTTTTCTTCATGCGCAGAGGTTTGGGGATTAAAACTCGTCGTGTCTTACTAAAGCCTCGCCGAAATCCGTCGCTTGACTCCCGACGAACAGGTCGTATTTATCCACAATCTCCTGCTTCGTGAGCCGTCCGTCTTATCTGCGTCTGATTCGTACAGCAGGTGTTTGGCCTCAGCCTCGGCGTGATCGTAGTCTGATGGCAGAATCCAGTCTTTCGTCTCCTCCTTGTCCATCCGtccatctttatttttatctctgAACTCTGTGAACTGCTCTCGCTCCGTCTTCACCCACTCGGGCTCTGTGGAGTCTCCATCCTGACTGTACATatcacCGATGTACTCCTCCAGGTCGATGAACCCGTCTCCATTTTTGTCAATGTCCTCCATCGTCTCCTGATGACgagaaaaagcaaaattataacaataaaagtgcattttttttacacattataaaaACAGGAACAGGCCTAAAGCAGAACCTTGAGGTTCTCCTTTGTGTTCAGGTTCCAGGTCACCATGACGACAGTAAAAGGTGAACCAGCGGAAGATGAGCTCAGATTAACATCGCtcctttaattcatttaattaacgATAACAAACAAATCACTGTAACTGACTGTTTATGAAAATATAAGGGAACTAAAATAAGAAGCTATGATCAGTAAACATGATTAGGAAAATATCTTATatgcaaaaatatacaaatgagtCCCACAATAAAGAAACAATGCAGgttgagaaataaaacagccaatcagcaacaaaCAGTGCTTCTAGCTCCACCCCCAGCGTATCCTTGTACACCTGCCCCCCCCCGTGTAGAACCTGCAGCCGGGACGCACCAGAACCACGATGTCCTGCATGTAGCCGTACTCCTCAGGGTGGAGGAACGACGTAGCCGTATGTAGCGTTCTTGTACTCCTCCCAGGACACGTGTCCGTCTGAATCGAGGTCGTGAGCCTGCCACTGTCGGTCCACGTCTTCATAAATCCAGCGCTTCTGAGCGTGTTTAATCCAGTTCTTCATCTCGTCCACCGTCACGAAGCCGTCATGATCCTCATCGATCTTATTGACAATTTTACGAGTCTATCTTTGCTCTCTTCTGGTGTGAGCTGGTCGAAGGTTTTTGCCTCCTCCTGGCCGAGGAAGGCTTCGTGGTCGTAGTCGAAATTCTCCTCGTCGTCGTGCTCCTTGTTGCTGAGAGGAGCATCGTGATGGACTCGGTCCTTCTTCTCCATCGGTTTAGTGGAGATGTGAGCCACACAAAGCGCAACGCACAGCAGCAACGGCCTGAGATCCTTCCTGTCTCACTCCACTTCCTGTCTCACTCCACTTCCTGTCTCACTCCACTTCCTgtctcaggacagaggactctAACCTCACTCCTCGGGGGTTTTCTTCACAAGCCGGCGGAGGAACAAACGCGTCCCGGATGTAAACTATTAAACTTTAGTCACACTTCCTGTGCAGAACTGGagctctgaccaatcaggtgcTTCATACGGCTATGTCCCGCCTCCAGGGCCGCGCCTCATGTCACAACGCTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126894 lncRNA upstream 59308 30394260 ~ 30498315 (+) False dnaja2b
TU126896 lncRNA upstream 59308 30394260 ~ 30498315 (+) False dnaja2b
TU126898 lncRNA upstream 59308 30394260 ~ 30498315 (+) False dnaja2b
TU126897 lncRNA upstream 59308 30394495 ~ 30498315 (+) False dnaja2b
TU126899 lncRNA upstream 59308 30394495 ~ 30498315 (+) False dnaja2b
TU127204 lncRNA downstream 165933 30728834 ~ 30729657 (+) True G107629
XR_003402817.2 lncRNA downstream 265175 30828076 ~ 30829663 (+) True LOC113526871
TU127253 lncRNA downstream 265199 30828100 ~ 30829657 (+) False LOC113526871
TU127254 lncRNA downstream 285058 30847959 ~ 30848474 (+) True G107657
TU127256 lncRNA downstream 287640 30850541 ~ 30854105 (+) True G107658
XM_034305443.1 mRNA upstream 59327 30491642 ~ 30498296 (+) True dnaja2b
XM_034305529.1 mRNA upstream 131168 30410666 ~ 30426455 (+) True lmf2a
XM_034304988.1 mRNA upstream 149063 30365619 ~ 30408560 (+) True c2cd5
XM_034305175.1 mRNA upstream 177878 30378703 ~ 30379745 (+) False LOC117597544
XM_034305174.1 mRNA upstream 177878 30378703 ~ 30379745 (+) True LOC117597544
XM_034305428.1 mRNA downstream 22882 30585783 ~ 30592140 (+) True si:dkey-88e18.2
XM_034305152.1 mRNA downstream 65511 30628412 ~ 30666725 (+) True vwf
XM_034305153.1 mRNA downstream 65511 30628412 ~ 30657541 (+) False vwf
XM_034305560.1 mRNA downstream 105375 30668276 ~ 30687719 (+) True LOC113526339
XM_034305561.1 mRNA downstream 105375 30668276 ~ 30687719 (+) False LOC113526339
XR_004578358.1 other upstream 2395754 28146263 ~ 28161869 (+) False def8
XR_004578357.1 other upstream 2395754 28146263 ~ 28161869 (+) False def8
XR_004578359.1 other upstream 2395754 28146263 ~ 28161869 (+) False def8
TU125683 other upstream 2486938 28066912 ~ 28070685 (+) True uraha
TU125656 other upstream 2595852 27959525 ~ 27961771 (+) False LOC113526832

Expression Profile