RNA id: TU127204


Basic Information

Item Value
RNA id TU127204
length 824
lncRNA type inter_gene
GC content 0.60
exon number 1
gene id G107629
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30728834 ~ 30729657 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTACGGCCTCGGCGAGGAGTCTCCGGATCTCGGGGTCGCCATGGTTACTGTGCAGCAAGGAGTGATGGAACACAAACTCGAAAACTCCTCCCACGGGGATGACATCACCAGCGTTTAAAACACACTGGTGCAGGTTCGGACACGGCGAGTGGAGCTGCGAGGACGCGAGACGCTGCGAGGACGCGAGACGCTGCGAGGACGCGAGACGCTGCTCGTCAGGACGCGGTGAGACGTTgttgtgtctgtgagagagactCAGATGCTGCAGCATGGAGAACACCCACGGCTCACGCTCACGCTCTGTTCGAGCGGTCCTGCAGCGGGCGCGCACAGcaccagggtgtgtgtgtgtactgacgTGTGTGTGACCCCGACGTTAGCGTATCTGCGTCCTCCGAGCTGAAAGCGGCGGCAGTGTGTCAGCGTCCCGACGCGCATCAGTGGCTGCACTGTGAGCGTTTCTGCCGTGCTGAGTTCACACAGCAGGTCCAGCTGCCCCGGATCGCAGCAGTCCAGCACAGAGACGGTGTTCAGCCACGCCCACGCCAGCACGCGGTCCGGCTGCTTCACCGCCGACAACACGACGTTCACCTGGAGGCGTGCAGGATTGTCGCTAATCTCTCCTGTATGACGCTGTCACTCTGAACTGTCCAGTCCTCCTGAAACTGAATACTCACACTCTCATCATAACGTTCGTCTAATTTCTCATAAACAACCAGCGCCTTCACCGGACCGTCTGTCTCTTTCCAAACGGACCAATCACAGGGCAGGAGGAGACCTTCCACCACGCGTGATTGGGCGCTGTGTAGTCCCGACACGGCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127154 lncRNA upstream 165933 30557623 ~ 30562901 (+) True G107591
TU126894 lncRNA upstream 230519 30394260 ~ 30498315 (+) False dnaja2b
XR_003402817.2 lncRNA downstream 98419 30828076 ~ 30829663 (+) True LOC113526871
TU127253 lncRNA downstream 98443 30828100 ~ 30829657 (+) False LOC113526871
TU127254 lncRNA downstream 118302 30847959 ~ 30848474 (+) True G107657
TU127256 lncRNA downstream 120884 30850541 ~ 30854105 (+) True G107658
TU127258 lncRNA downstream 124956 30854613 ~ 30859896 (+) False G107659
XM_026913947.2 mRNA upstream 879 30720852 ~ 30727955 (+) True si:dkey-30c15.17
XM_026913945.2 mRNA upstream 10688 30711776 ~ 30718146 (+) True glipr1b
XM_026913946.2 mRNA upstream 10688 30711776 ~ 30718146 (+) False glipr1b
XM_026913944.2 mRNA upstream 11091 30711773 ~ 30717743 (+) False glipr1b
XM_034305309.1 mRNA upstream 11091 30711778 ~ 30717743 (+) False glipr1b
XM_026913943.2 mRNA downstream 3802 30733459 ~ 30738572 (+) True syt1b
XM_034305095.1 mRNA downstream 30528 30760185 ~ 30774967 (+) False terb1
XM_034305094.1 mRNA downstream 30720 30760377 ~ 30774967 (+) False terb1
XM_034305096.1 mRNA downstream 30725 30760382 ~ 30774967 (+) False terb1
XM_034305099.1 mRNA downstream 30726 30760383 ~ 30795802 (+) False terb1
XR_004578358.1 other upstream 2566965 28146263 ~ 28161869 (+) False def8
XR_004578357.1 other upstream 2566965 28146263 ~ 28161869 (+) False def8
XR_004578359.1 other upstream 2566965 28146263 ~ 28161869 (+) False def8
TU125683 other upstream 2658149 28066912 ~ 28070685 (+) True uraha
TU125656 other upstream 2767063 27959525 ~ 27961771 (+) False LOC113526832

Expression Profile