RNA id: XR_003402817.2


Basic Information

Item Value
RNA id XR_003402817.2
length 573
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id LOC113526871
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30828076 ~ 30829663 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACTCACCATGGGCGTGTCTGAGGGTGAAAGAGGATAAATACTGAGCAGAAGAGAAACTCggtcttttctttcctcttgaCTTCTTCATTCTGCAGAAGGAGCTGAAACTGAGAGCGCTTCGTGATCTGCTGCTCCAGGAGGATTTGGCCATGTAGCCACCGCTTGCATCTTTCCTATCtctggaggaggatgaggagttAAAACACATCTGCCAAGGGGTGTGGCACTCGGTCCTTCTGCGCCCCGTGTCAGACGTCATGTGGGGTGGCCACGCCCTCCCTGAGGGCACGGGACGCCCCCCTGCAGTCTGCACTCGGAGTCCAGTGGGTCTGCAGTGGACAGCGCCAGGTCTGCACTGACCTGCCAATTAAGCCCTAGATTCCAGAAGCAACCACAAAAAACCACGTAAAAGTTCACTTCTCGCTTCTGGTGTCTGTTGCTTGGTTGGCAGGTTCGTGGTTGGCCTGCCGTTGAACGAACAACCTTTTACTGTAGTTTCTTCAAAGCTGTACGCCATTTTccaactcaaaaaaaaaaaatctataaaaatagtaaaacaatGCAACATAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127204 lncRNA upstream 98419 30728834 ~ 30729657 (+) True G107629
TU127154 lncRNA upstream 265175 30557623 ~ 30562901 (+) True G107591
TU126897 lncRNA upstream 329761 30394495 ~ 30498315 (+) False dnaja2b
TU127254 lncRNA downstream 18296 30847959 ~ 30848474 (+) True G107657
TU127256 lncRNA downstream 20878 30850541 ~ 30854105 (+) True G107658
TU127258 lncRNA downstream 24950 30854613 ~ 30859896 (+) False G107659
TU127259 lncRNA downstream 28271 30857934 ~ 30868459 (+) True G107659
TU127260 lncRNA downstream 28271 30857934 ~ 30867021 (+) False G107659
XM_034305382.1 mRNA upstream 2110 30816547 ~ 30825966 (+) True LOC113526343
XM_034305495.1 mRNA upstream 16101 30808138 ~ 30811975 (+) True arf5
XM_034305099.1 mRNA upstream 32274 30760383 ~ 30795802 (+) False terb1
XM_034305102.1 mRNA upstream 32282 30760383 ~ 30795794 (+) False terb1
XM_034305107.1 mRNA upstream 32374 30760383 ~ 30795702 (+) False terb1
XM_034305000.1 mRNA downstream 146046 30975709 ~ 30985960 (+) True pgr
XM_026911260.2 mRNA downstream 146363 30976026 ~ 30985960 (+) False pgr
XR_004578358.1 other upstream 2666207 28146263 ~ 28161869 (+) False def8
XR_004578357.1 other upstream 2666207 28146263 ~ 28161869 (+) False def8
XR_004578359.1 other upstream 2666207 28146263 ~ 28161869 (+) False def8
TU125683 other upstream 2757391 28066912 ~ 28070685 (+) True uraha
TU125656 other upstream 2866305 27959525 ~ 27961771 (+) False LOC113526832

Expression Profile