RNA id: TU127254


Basic Information

Item Value
RNA id TU127254
length 364
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G107657
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30847959 ~ 30848474 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGTACACAGGTTGAGGGAGGTAGTTCTCCCCTTCTATGCGGATGTCTGGGTACCTCTGGCTAAGAACCCGAGTGTACTCCTCAAACACCCGCCTGTAGCCTCAGGAAATGCTGCAGAGAGACGAGTAGAGCGGCTGTAAACATCTTTCACAACCTCAGGAACTCAGATATACAACAATACACGCTTCAGTACCCCGTACACGCTTCAGTACCACGCTTCAGTACCACGCTTCAGTACCACGCTTCAGTACCCCGTACACGCTTCAGTACCACGCTTCAGTACCACGCTTCAGTACCACGCTTCAGTACCCCGTACACGCTTCAGTACCACGCTTCAGTACCCCGTACACGCTTCAGTACCCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003402817.2 lncRNA upstream 18296 30828076 ~ 30829663 (+) True LOC113526871
TU127253 lncRNA upstream 18302 30828100 ~ 30829657 (+) False LOC113526871
TU127204 lncRNA upstream 118302 30728834 ~ 30729657 (+) True G107629
TU127154 lncRNA upstream 285058 30557623 ~ 30562901 (+) True G107591
TU126899 lncRNA upstream 349644 30394495 ~ 30498315 (+) False dnaja2b
TU127256 lncRNA downstream 2067 30850541 ~ 30854105 (+) True G107658
TU127258 lncRNA downstream 6139 30854613 ~ 30859896 (+) False G107659
TU127259 lncRNA downstream 9460 30857934 ~ 30868459 (+) True G107659
TU127260 lncRNA downstream 9460 30857934 ~ 30867021 (+) False G107659
TU127261 lncRNA downstream 11724 30860198 ~ 30861847 (+) True G107660
XM_034305382.1 mRNA upstream 21993 30816547 ~ 30825966 (+) True LOC113526343
XM_034305495.1 mRNA upstream 35984 30808138 ~ 30811975 (+) True arf5
XM_034305092.1 mRNA upstream 72992 30760394 ~ 30774967 (+) False terb1
XM_034305112.1 mRNA upstream 72992 30761580 ~ 30774967 (+) False terb1
XM_034305108.1 mRNA upstream 74040 30760383 ~ 30773919 (+) False terb1
XM_034305000.1 mRNA downstream 127235 30975709 ~ 30985960 (+) True pgr
XM_026911260.2 mRNA downstream 127552 30976026 ~ 30985960 (+) False pgr
XR_004578358.1 other upstream 2686090 28146263 ~ 28161869 (+) False def8
XR_004578357.1 other upstream 2686090 28146263 ~ 28161869 (+) False def8
XR_004578359.1 other upstream 2686090 28146263 ~ 28161869 (+) False def8
TU125683 other upstream 2777274 28066912 ~ 28070685 (+) True uraha
TU125656 other upstream 2886188 27959525 ~ 27961771 (+) False LOC113526832

Expression Profile