RNA id: TU127260


Basic Information

Item Value
RNA id TU127260
length 1036
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G107659
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30854613 ~ 30868459 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

attacatgcatttatttgagagagaaacaaacaaaaatggccacacacacatctcattgTGGTCACCAGCACATTTCTGAGTCGTTGAACAGGTcagataaaaatttaaaaattaaagcattACAAACGTTGGATGGTTCGAGGCGAGGCACAGAGAACAGTGATGATGTGGACGTGCAGATCAACCTGcttatttcatatttcagcAAAGTGCTAAAGCTGAGAGCCAATCAGAGGCCAGAGActggaataaattaaaaactacatcatcatcatcataagtGAGCTATATTATAGGTGGAGCGTGAGTCTCTGGCTCCCCCTGCTGGCTGTCGCTGTAGTGTCACCCCACAGTACAATAGTGTcgtatttattcattcttacTCACTTACTCAACTTTCATCCTCTTTCATCCTCGCCCTACATATCTCATCTCCCTGAAACAGTGTGTTTACTCTCCATTCCCGATTTTATACATATAGAATCAACGTAAACCCCCTAAATATCTCCCTAGCcctaaaaaaagtataattgcTCTTTATATTATCTGAAAATATACACCAGTATGGGagaaaaaatctttaaaaaccAAATCCCTCAGTAACAACTAATAAAAAACCGACTGGGGAAAAGAGGACAGAAACATAAATcactcagaagaaaaaaaaaaaaaaactcattttaataaaataaatagaaaataaatgatttctgAAAGCAGCAAAATAAAGAAGACAATTAAAGGCGAGGTGTTGAACTGGAAAGGCAGGAAGAGACACGGGAAGAGCGACACACATTTCTGCCTGAACGTTTTAGTGTCATTTCTTTACGCGAGGAAAACATGAGTGATGAGGAAAGATCTGGAAAAATCAGCCAAAGCGGAAGAGACTCCCCAAATCCCAGATTTGGAACATTCACTTGGATTTCCAGAAGCCTTCAGAGTCGGAAAACTGAGATCCAGAAGATTAGAACATGATGCttaagatcacacacacacacacacacacacacacacacacacacacacacacacaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127256 lncRNA upstream 3829 30850541 ~ 30854105 (+) True G107658
TU127254 lncRNA upstream 9460 30847959 ~ 30848474 (+) True G107657
XR_003402817.2 lncRNA upstream 28271 30828076 ~ 30829663 (+) True LOC113526871
TU127253 lncRNA upstream 28277 30828100 ~ 30829657 (+) False LOC113526871
TU127204 lncRNA upstream 128277 30728834 ~ 30729657 (+) True G107629
TU127265 lncRNA downstream 29203 30896224 ~ 30898060 (+) True G107664
TU127279 lncRNA downstream 32079 30899100 ~ 30899679 (+) True G107677
TU127294 lncRNA downstream 99705 30966726 ~ 30967031 (+) True G107690
TU127295 lncRNA downstream 99705 30966726 ~ 30967031 (+) False G107690
TU127303 lncRNA downstream 127569 30994590 ~ 31002241 (+) True G107697
XM_034305382.1 mRNA upstream 31968 30816547 ~ 30825966 (+) True LOC113526343
XM_034305495.1 mRNA upstream 45959 30808138 ~ 30811975 (+) True arf5
XM_034305092.1 mRNA upstream 82967 30760394 ~ 30774967 (+) False terb1
XM_034305112.1 mRNA upstream 82967 30761580 ~ 30774967 (+) False terb1
XM_034305108.1 mRNA upstream 84015 30760383 ~ 30773919 (+) False terb1
XM_034305000.1 mRNA downstream 108688 30975709 ~ 30985960 (+) True pgr
XM_026911260.2 mRNA downstream 109005 30976026 ~ 30985960 (+) False pgr
XR_004578358.1 other upstream 2696065 28146263 ~ 28161869 (+) False def8
XR_004578357.1 other upstream 2696065 28146263 ~ 28161869 (+) False def8
XR_004578359.1 other upstream 2696065 28146263 ~ 28161869 (+) False def8
TU125683 other upstream 2787249 28066912 ~ 28070685 (+) True uraha
TU125656 other upstream 2896163 27959525 ~ 27961771 (+) False LOC113526832

Expression Profile