RNA id: TU127261


Basic Information

Item Value
RNA id TU127261
length 1385
lncRNA type inter_gene
GC content 0.55
exon number 2
gene id G107660
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30860198 ~ 30861847 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCGCTTCAGCACTAAGGTGCGTCTCTGCTCGCGTCCAAACTGGCGTCCAGCAGAAGCTCCTCCAGATCCTGACCACAGCTCAGCTCCGCCGTCACACTCACTGGGACAAAAACAGGGAAAAACACTGTGCTCCATGACGCAGCAGGCCGCTTTATGCGCCTCGGGCTCCAGCAGGTGCAGCGTGAACTCGGGCTTCAGGCCGTTCGGCAGGATGGTGCCTGCAGGTGGCGCTGTGTCGAGACTCTCCACCTCTTCTGCTGAGGAAAAGCTGTTTACTGTTTCCAAGTCCTGCTCCAGTGAGGCGTCTTTATCCAGCTGTTGGTCATCGTTTGGCGTTTCTGTGTCCAGATGTTCTGAGAGTTCCTCCTGCAGCTCCCCGGTTGGATTGCTGCTGCTCGGTTCCTCATGCACTTCTTCAGCAGGTTTCAGCTGATCCTGGAACAGTTCCTCAGACTCTGCAGGGGCGGTGTGATGGATCTGAGCATGCTCAGTGTGCATGAGTTCATCTCTCGTTGTTTCCTTGTCTGGTTCTGTGCTGGGATTCGGATCCTGCTGTGTTTGGCTGTGTGTAGAAGGTTGCTCCTCTGTGGTGCTCAGTGATGGTTCTGCTTCTCCTGGTTTAGACTCTGCTGATACTCGTGAAGGTTCCTCAGATGTCTCCTGAGCTGAAGTGGTTCTCTCTGCACTCTGTTGGTTCTGAGAGACTGGCTGTTGTTTTGAAGATGTCTCAGAAGGTGTTTTATTCTCCTGGACATGCTTCGTCAGGTcgctctgctgctgctgctgctgctcaggAGGACTCTCCACACGCGTCACCATGAAGATCTTGTGTCCTCTCCCAGGGCTGGACACTGAAAAGCAGCGTCCAGGTGAAGAAGGCGTTCCGCTCGACACGCTCGCTTCCGTCACTCTGATCCCCGACACCACGTTTGCCGTCTCGGGGGTGGAGCTAGGAGTATTAATGGGCGGAGTCTGACAGGCACTGTGCGTGGTGTTTATGGGGGGCGGGGTTTGGTTCAGAGTTGACGTCTGTGCAGCTGTTATTGTCTCTCTGACATCTTCATTgtcgtcgtcgtcgtcgtcAGTGTCGGTATCGGAATCCGAGTCTTCCTGAGCGGCTGCTGTTTGTTCTTCATCCTCTCGGATTTCGCTCGGCTTTTCGCTCTCATCCTCCTGcgcctcctcctgctcctgttcGTCCTCCTCACGTTCGGTCTTCTGTCCCTCTGAGACTTGATCTCCAgcgtcctcctcttcctcaggaGGCGGATCCTCAGTGGCGATTTCAGCCATGGACACCGACTGCCTCATCTGCTGCTGAGATTCCTCCTTCTCTTTAGCAAGGACGAAGTTACGCTTGCAGCCGTTCTGGATTTCGGTCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127258 lncRNA upstream 302 30854613 ~ 30859896 (+) False G107659
TU127256 lncRNA upstream 6093 30850541 ~ 30854105 (+) True G107658
TU127254 lncRNA upstream 11724 30847959 ~ 30848474 (+) True G107657
XR_003402817.2 lncRNA upstream 30535 30828076 ~ 30829663 (+) True LOC113526871
TU127253 lncRNA upstream 30541 30828100 ~ 30829657 (+) False LOC113526871
TU127264 lncRNA downstream 2463 30864310 ~ 30865934 (+) True G107663
TU127266 lncRNA downstream 3550 30865397 ~ 30898060 (+) False G107664
TU127265 lncRNA downstream 34377 30896224 ~ 30898060 (+) True G107664
TU127279 lncRNA downstream 37253 30899100 ~ 30899679 (+) True G107677
TU127294 lncRNA downstream 104879 30966726 ~ 30967031 (+) True G107690
XM_034305382.1 mRNA upstream 34232 30816547 ~ 30825966 (+) True LOC113526343
XM_034305495.1 mRNA upstream 48223 30808138 ~ 30811975 (+) True arf5
XM_034305092.1 mRNA upstream 85231 30760394 ~ 30774967 (+) False terb1
XM_034305112.1 mRNA upstream 85231 30761580 ~ 30774967 (+) False terb1
XM_034305108.1 mRNA upstream 86279 30760383 ~ 30773919 (+) False terb1
XM_034305000.1 mRNA downstream 113862 30975709 ~ 30985960 (+) True pgr
XM_026911260.2 mRNA downstream 114179 30976026 ~ 30985960 (+) False pgr
XR_004578358.1 other upstream 2698329 28146263 ~ 28161869 (+) False def8
XR_004578357.1 other upstream 2698329 28146263 ~ 28161869 (+) False def8
XR_004578359.1 other upstream 2698329 28146263 ~ 28161869 (+) False def8
TU125683 other upstream 2789513 28066912 ~ 28070685 (+) True uraha
TU125656 other upstream 2898427 27959525 ~ 27961771 (+) False LOC113526832

Expression Profile